Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_J07
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 29 0.34
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 0.78
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 1.4
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 1.8
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ... 25 4.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 24 7.2
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 7.2
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 24 7.2
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 24 9.6
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 24 9.6
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 24 9.6
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 28.7 bits (61), Expect = 0.34
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 297 INRRLLV*NTTII*NYIMPHFRIETNISRSKIPADFVVKAIPVLAK 160
+NR L TT N ++PH+ + ++ K+ ADFV +LAK
Sbjct: 612 VNRTLKF--TTAKYNGLVPHYLTDPSVGAGKLKADFVKDVNALLAK 655
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.5 bits (58), Expect = 0.78
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 264 LLCFKREDVDLFRRNAKFTIFSMS*RLEIQYKQ--NHRP 374
LL K EDV++++RNA I + I KQ +HRP
Sbjct: 1315 LLEVKNEDVNIYKRNALLFILKALAEMRILDKQSWHHRP 1353
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 1.4
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = -2
Query: 243 PHF-RIETNISRSKIPADFVVKAIPV--LAKALGKPEQHVHNLPRRTYRQRWI*RNDFPR 73
P F R E ++S +P D V I K K L + T R W N+ P
Sbjct: 450 PSFSRYELQSAQSVLPKDLPVSVISAGKSMKRFKKWPDEQRQLSKLTQRTVWDIVNNAPH 509
Query: 72 DLWIN 58
D+W++
Sbjct: 510 DVWLS 514
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 274 KHNNNLKLYNASL*NRNQHFKIK 206
K +N ++LY+ L NRN+ KIK
Sbjct: 4 KQDNEVELYSIDLKNRNESAKIK 26
>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
Orc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 231 IETNISRSKIPADFVVKA-IPVLAKALGKPEQHVHNLPRR 115
+ TN R + ++ A + V AKA GK E H+++ RR
Sbjct: 133 VVTNDMRIEHKRGIIIAAYLLVSAKAFGKDELHINHTERR 172
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 229 YSKVRHYIILDYCCVLNEKTSIYLGEMQNL 318
+S+ I L YC NE+ +I L +M+++
Sbjct: 635 FSRTNQLICLFYCLTGNEEATIQLIQMRHI 664
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 280 RLKHNNNLKLYNASL*NRNQHFKIKNPS*FCGKSYTG 170
+L +N NL + S N+H ++KN C S++G
Sbjct: 104 QLSYNENLDQRSFSK-TPNKHIEVKNLKDLCSPSHSG 139
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 267 LCFKREDVDLFRRNAKFTIFSM 332
+CFK+EDVD ++ FT S+
Sbjct: 13 VCFKQEDVDSLKKPNWFTDVSI 34
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 222 NISRSKIPADFVVKAIPVLAKALGKP 145
NI+ S+ P V+K IPV A P
Sbjct: 564 NITSSQYPNQDVIKEIPVTASETSPP 589
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 352 CISSLYDIEKIVNFAFLLNKSTS 284
CI + D ++N A LL KS S
Sbjct: 232 CIKNAKDTRLVINHALLLEKSKS 254
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 131 CTCCSGLPRALANTGIAFTTKSAGIFDLEMLVS 229
C C G+P G+ F TKS + L M+++
Sbjct: 235 CLSC-GIPAGFIAYGLEFVTKSIAPWKLFMIIT 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,923
Number of Sequences: 5004
Number of extensions: 34451
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -