Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_J06
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 565 IQVSKSGGWSRISQVISW 618
           ++ SKS GW ++  ++ W
Sbjct: 445 VKSSKSSGWRKLRNIVHW 462


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 556 SGSIQVSKSGGWSRISQVISW 618
           S   ++ KS GW ++  ++ W
Sbjct: 208 SNEKKIPKSSGWRKLRNIVHW 228


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +1

Query: 577 KSGGWSRISQVISW 618
           KS GW ++  ++ W
Sbjct: 130 KSSGWRKLRNIVHW 143


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 114 QYCVIILKSCRVIY 73
           Q C +IL SC+ IY
Sbjct: 174 QSCPLILGSCKCIY 187


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 243 WFPQVVLVYPH 275
           WFP VV++Y +
Sbjct: 214 WFPLVVIIYTY 224


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 346 CQLVFFR*LVHTQNSNNVLQGFVVLKNFLNSTCNIVVLS 462
           C LV F     ++N N       V KNF N  C  + L+
Sbjct: 84  CSLVEF-----SENKNCNAGSLTVKKNFANKYCGNITLN 117


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 415 VLKNFLNSTCNI 450
           +++N LNSTC++
Sbjct: 340 IVRNHLNSTCSV 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,305
Number of Sequences: 438
Number of extensions: 4882
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)