Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_J03
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608           29   4.6  
10_07_0022 + 11957159-11957334,11957481-11957731,11958009-11958274     29   6.0  

>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
          Length = 241

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 607 VVVHRSGDVCRATLLHHHRHIRTGT 533
           V+VH  GD+    LLH H H  T T
Sbjct: 133 VMVHGGGDLSNIILLHPHHHPNTAT 157


>10_07_0022 + 11957159-11957334,11957481-11957731,11958009-11958274
          Length = 230

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -2

Query: 312 VKGSDKTSSPLDVATD------KFENDKVLDLNHRKLVAECTDGGS-DSGVENPAYNETE 154
           V G  + +S +DVA         FE+  VL+++HR  + E +DG S + GV +   N   
Sbjct: 79  VVGQRRQNSSVDVAGSTQGTNCNFESTVVLEMSHRGCMHEESDGNSPELGVASVVRNGGR 138

Query: 153 CANGSKKDE 127
              G  K+E
Sbjct: 139 SGVGGYKEE 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,900,363
Number of Sequences: 37544
Number of extensions: 394138
Number of successful extensions: 1133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)