Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I24
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...   113   2e-26
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    29   0.72 
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    27   3.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.8  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   5.1  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    26   5.1  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   5.1  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    26   6.7  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   6.7  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   8.9  

>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score =  113 bits (273), Expect = 2e-26
 Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 14/232 (6%)
 Frame = -1

Query: 752 ADXACMTLSNITRLED-----ELEVCLXTFIPHLN---DIMNAFVN-TEFN-KTGSNLHY 603
           AD +CM L N+ + ED     +++V L  F    N    +M+ FV  T+      +N  +
Sbjct: 103 ADLSCMLLCNLAKEEDFARILDMQVPLREFSLSKNIIDQLMDLFVKGTDHGINEYANFDF 162

Query: 602 LAPMFSNLACSHRIRKWLC--EENPHV-PLIKLIPFCNYDVSNIRKGGAIGTIRNISFDT 432
           LA +F+++    R RK+    +E  HV P  KL+ F  +  S +R+ G    I+NISFD 
Sbjct: 163 LANVFADMTRFERGRKYFTTLQEYDHVIPASKLVVFTEHK-SLLRRTGVAAIIKNISFDI 221

Query: 431 DYHEFLVSPD-LDLLTYILYPLMGNEDYPDDEMETLPVTLQYLPKEKRREPDIDIRILIL 255
            + + L+  + +++L Y+L PL G E+  +++M+ +   LQ LP +K+REPD  I   ++
Sbjct: 222 PFQKVLMDEEGINVLPYLLLPLAGPEELSEEDMDGMFDELQLLPDDKKREPDHFIMKTLV 281

Query: 254 ETLNKLCAQRRGRQYLRENGVYYIMREYHKWEKDPKALIACENVVDILIQKE 99
           ETL  L A R GR+++R   VY I+RE H    D +    C+ +V +L++ E
Sbjct: 282 ETLVLLTATREGREHMRRRKVYPIIRELHLNVDDEEIREVCDQLVQMLVRDE 333


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 96  VFLLNQYIHYILTRYQSFRVFFPFMIFSHYIVHSVLA-*ILSASTLSTQFV 245
           V +  +Y +    RYQSF  F+P  +FS+   + +LA  ++++ TL T F+
Sbjct: 332 VSVAERYANEFFLRYQSFFYFYPPSVFSNR--YQILADGLVNSDTLDTGFL 380


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 185 IMREYHKWEKDPKALIACENVVDILIQKEDEVGAEDLSTVEVPEELRERF 36
           IMR     E+  +       +  ILIQ+++E     L  +++PE++ +R+
Sbjct: 84  IMRAGESMEQGLRECCRSVRIGKILIQRDEETHKPVLHYIKLPEDISKRY 133


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = -1

Query: 446 ISFDTDYHEFLVSPDLDLLTYILYPLMGNEDYPDDEMETLPVTLQYLPKEKRREPDIDIR 267
           +S  TD   F+ +  + L T     +   + +P   +    V       E    P + +R
Sbjct: 279 VSASTDSASFMENAKVALTTLFWIGVRSQQTFPTTTLPPSVVADSLASSEGNPTPMLAVR 338

Query: 266 ILILETLNK 240
            L +ETLNK
Sbjct: 339 DLPIETLNK 347


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 155 LFPIYDILSLYSTLRSRV--NTVCLYVEHTICSVSPVSEYVCLYQALSASPLVNTV 316
           L+P   IL LY   R  +   T  L V     S++ VS+Y+ +   L  SPL+ TV
Sbjct: 239 LWPFLIILHLYGVERFSLPSTTAGLIVLIINASITFVSDYLWVIAMLMTSPLLVTV 294


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 338 METLPVTLQYLPKEKRREPDID-IRILILETLNKLCAQRRGRQYLRENGVYYIMRE 174
           ++ L   L+++  E+ R+  +  I   I E   +L A  R R++   NGV  ++RE
Sbjct: 49  IKLLATNLEWITVEEERDYLVSTICERIAERSGRLAAPTRKREFSLSNGVSVVLRE 104


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 551 LCEENPHVPLIKLIPFCNYDVSNIRKGGAIGTI-RNISFDTDYHEFLV 411
           +C EN   PL KL+P C       RK G    +  ++ FDTD+H F +
Sbjct: 181 VCTENLS-PLFKLLP-CK------RKAGIASLLDSHLFFDTDWHSFSI 220


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 452 RNISFDTDYHEFLVSPDLDLLTYILYP 372
           R + F T   + L+SP++DL T+I+ P
Sbjct: 311 RRLVFQTITAKMLLSPEVDLDTFIMRP 337


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 617 SNLHYLAPMF-SNLACSHRIRKWLCEENPHVP 525
           SN+ +++ +   +L  +H I KWL  +  H+P
Sbjct: 371 SNVDHMSSLILGSLKLAHAIMKWLVSDVEHIP 402


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 308 LPKEKRREPDIDIRILILETLNKLCAQRRGR 216
           L K+K  E DI    L+++ + K+  QRRGR
Sbjct: 301 LEKQKPTEADIKRWTLLVDKMIKVDPQRRGR 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,323
Number of Sequences: 5004
Number of extensions: 73814
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)