Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_I24
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061... 48 6e-06
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 33 0.25
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 30 2.3
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 25 3.7
11_06_0481 + 24092574-24093962 29 5.3
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 29 5.3
04_04_0339 - 24513699-24516827 28 7.0
12_02_1244 + 27302715-27302754,27302865-27302936,27303250-273034... 28 9.3
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 9.3
11_04_0176 - 14536305-14537315 28 9.3
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 28 9.3
>10_07_0147 +
13404711-13404764,13404865-13405232,13406105-13406153,
13406374-13406470,13406863-13407011,13407554-13407667,
13408196-13408327,13409143-13409256,13410233-13410454
Length = 432
Score = 48.4 bits (110), Expect = 6e-06
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Frame = -1
Query: 605 YLAPMFSNLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIGTIRNISFDTDY 426
++A + N++ R+ L E P L+K I + + +RK G + TIRN F+ D
Sbjct: 196 HVASILVNISKVEAGRRILME--PKRGLLKQIIRQSDSTNQLRKKGVVSTIRNCCFEADT 253
Query: 425 H-EFLVSPDLDLLTYILYPLMGNEDYPDDEMETLPVTL-QYLPKEKRREPDIDIRILILE 252
+ L+S + +L P+ G + Y +++ +P L L E+ + +IR LE
Sbjct: 254 QIQNLLSLAEYIWPALLLPVAGKKIYSEEDRSKMPPELANALSHEREAVENSEIRQQALE 313
Query: 251 TLNKLCAQRRGRQ-YLRENGVYYIMREYHKWEKDPKALIACE 129
+ + Q GR+ + NG + Y E+DPK + A E
Sbjct: 314 AIYMIVLQDEGRRAFWSVNGPRILQVGYED-EEDPKVMEAYE 354
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/54 (42%), Positives = 26/54 (48%)
Frame = -3
Query: 222 RQTVFTRERSVLYNERIS*MGKRPESFDSV*ECSGYTDSEGRRGRCGGPVNSRS 61
RQ VF RE +V+ KRPE S GY+D EGRR G SRS
Sbjct: 100 RQVVFGREITVVLAAESR---KRPEEMRSRARVRGYSDHEGRRSSHYGRSRSRS 150
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 666 KRYHERIREHRV*-QDRFEPALPGAHV*QPGLQPQNKEVALRRESP 532
KR+ ER+RE + FE A AH QP N E RRESP
Sbjct: 232 KRWTERLRESVTNLSNAFEEAATAAHPEQPPTGDANGEDPERRESP 277
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 25.0 bits (52), Expect(2) = 3.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 113 VYPLHSHTLSKLSGLFPIYDILSLYSTLRSRV 208
++P H + L++ +P +I+SLY + R+
Sbjct: 250 IFPHHENELAQSQAAYPESEIISLYHPMALRL 281
Score = 22.6 bits (46), Expect(2) = 3.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 182 LYSTLRSRVNTVCLYVEHTICSVSPVSE 265
+Y TL TV LY EH + + P +
Sbjct: 309 IYQTLHDGEETVSLYGEHKLENSIPADD 336
>11_06_0481 + 24092574-24093962
Length = 462
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 634 SLTRPVRTCITWRPCLATWPAATE*GSGSAKR 539
S+ R R C WRPC P A SG+A+R
Sbjct: 16 SIHRQYRRCNPWRPCWT--PVAAPSSSGAARR 45
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 149 SGLFPIYDILSLYSTL 196
+GLFP +D+LSLYS L
Sbjct: 432 AGLFPTFDVLSLYSRL 447
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 110 SVYPLHSHTLSKLSGLFPIYDILSLYST 193
S++P+HS T +L+G+F D++ L S+
Sbjct: 410 SLFPVHSFTPEQLTGMFVADDLIKLSSS 437
>12_02_1244 +
27302715-27302754,27302865-27302936,27303250-27303423,
27303533-27303667,27304407-27304546,27304844-27304933,
27305064-27305186,27305590-27305742,27306032-27306148,
27306818-27306988,27307082-27307161,27307238-27307262
Length = 439
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 314 VK*QGVFPFRHQDNLRCPLRDTKCM*ADPSPGSLGTRGSLC 436
+K QG F+ QD L + T+ + DP G+L + SLC
Sbjct: 326 MKQQGDAAFKKQDYLNASVFYTQALKVDPFDGTLFSNRSLC 366
>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 737 MTLSNITRLEDELEVCLXTFIPHLNDIMNAFVNTEFNKTGSNLHYLAPMF 588
+T SN+ ED+L L P+L+ + N N F + N L+P+F
Sbjct: 1036 VTTSNLLNPEDDLSFKLEYAHPYLDGVDNRSRNRTFKISCFNSRKLSPIF 1085
>11_04_0176 - 14536305-14537315
Length = 336
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 101 PSESVYPLHSHTLSKLSGLFPIYDILSLYSTLRS 202
PS+ +PL H L G IY L LY +L S
Sbjct: 82 PSDEHHPLLEHNPHDLVGFLEIYPKLELYESLPS 115
>11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 737 MTLSNITRLEDELEVCLXTFIPHLNDIMNAFVNTEFNKTGSNLHYLAPMF 588
+T SN+ ED+L L P+L+ I N N F + N L+P+F
Sbjct: 1013 VTSSNLLNPEDDLSFKLEYAHPYLDGIDNLSRNRTFKISCFNSRKLSPIF 1062
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,637,916
Number of Sequences: 37544
Number of extensions: 458682
Number of successful extensions: 1191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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