Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I24
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.77 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 467 HHPSVCWTHHSYRTVLILLTVHGDSLRRATSLF 565
           HH S  WT       L  L  H  SL +A++ F
Sbjct: 405 HHGSKSWTQEDMDAALEALRNHDMSLTKASATF 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 273 HTYSDTGDTEQIVC 232
           HTYS+TG +  +VC
Sbjct: 184 HTYSETGPSHCVVC 197


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 234 TQFVQCLQYQNTYVYI 281
           T  VQ   Y NT+VYI
Sbjct: 187 TPIVQSFDYNNTWVYI 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,987
Number of Sequences: 438
Number of extensions: 5235
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)