Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I18
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    31   0.23 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    30   0.31 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   5.0  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 446 RRWISQLMVLVFTSREVTMVFEWRLSSASGNTVGFIKNNKNS 571
           RRWI     +++    V+ V    L   SGN +G +KNN+ S
Sbjct: 281 RRWIVYPAAMIWPQTLVSTVLFRTLHGNSGNDIGVLKNNRIS 322


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 729 HVLEFVCQSVKKGYIV-TPKFDLNTNVRNESCYLSXVLACIR*MCGIIHLKQIVEFLL 559
           H+   V   +K   +V  P  DL     +E C+LS VL      C    L  +VE+LL
Sbjct: 689 HIEHSVISQIKSELLVRVPNIDLKPLSTSEICFLSAVLLLESLRCKSNKLSALVEYLL 746


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 251 NSILFTETFCLYNYRFIISETNTKYKLKLGHGLNSL 358
           NS L T T  + NY    S T T Y    G GLNS+
Sbjct: 96  NSALTTVTDGMLNYYQSTSHTFTAYWWMTGAGLNSM 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,822
Number of Sequences: 5004
Number of extensions: 63904
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)