Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I16
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    28   0.91 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.6  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   3.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.5  

>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 136 RKMQDKCLWTCPDYRHLCRPWTSTKCKVH 222
           R++++KC +   D+R     WT  K ++H
Sbjct: 215 REIKEKCCYVASDFRSEIESWTEHKPQIH 243


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 423 GGRAHSPPGVKWLLKPIDIYN 485
           GG  H P  V WLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 386 EIGFKFFFNCLNGWTS 433
           E G  F ++C+NGWTS
Sbjct: 270 ECGHIFCWSCINGWTS 285


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 112 YTIKTKRKRKMQDKCLWTCPDYRHLCRP 195
           YTI T   + +    +++CP Y H C P
Sbjct: 879 YTIGTSNAKDVSH-FVFSCPYYTHFCHP 905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,820
Number of Sequences: 5004
Number of extensions: 51992
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)