Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I16
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1618 + 28280414-28281193                                         29   2.2  
08_01_0657 + 5674907-5674993,5675615-5676583                           29   3.8  
07_03_1582 + 27895744-27896985                                         27   8.7  

>08_02_1618 + 28280414-28281193
          Length = 259

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 432 LVHPFKQLKKNLNPISPTEPASWVPPASQ 346
           L HPF Q KK   PI  T+ AS + PAS+
Sbjct: 222 LPHPFNQTKKWDRPILQTKHASGIIPASK 250


>08_01_0657 + 5674907-5674993,5675615-5676583
          Length = 351

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 495 AHLRCRCLWASVTTSHQVDYELVHPFKQ 412
           A LRCR +  S TTS  VD  + H FK+
Sbjct: 79  AALRCRLISNSATTSAAVDGHVSHAFKR 106


>07_03_1582 + 27895744-27896985
          Length = 413

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 164 HALIIGIYVARGHQQSAKCMRETLRQAGVSGVP 262
           H L+  +Y A G     + +R T+R  G+  +P
Sbjct: 247 HVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIP 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,036
Number of Sequences: 37544
Number of extensions: 354711
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)