Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.084
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   2.4  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   2.4  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   4.2  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   5.5  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   5.5  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   7.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.3  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 31.1 bits (67), Expect = 0.084
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 258 NNHCLLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL 395
           NN C  ++  +L +    L E  K + Y   R K LPLL  ++DVL
Sbjct: 717 NNDCKSQLNAYLMQMRTGLSEKAKDHVYV--RSKTLPLLKCVIDVL 760


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 270 LLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL*YTNDE-----GANTSIT 434
           LLK+K+     F    +D +S ++  +R++  PL+  I D   Y N E      A+ S++
Sbjct: 417 LLKLKVKNGPAFGLFNQDFESIFHRLSRQQPTPLIGAIAD---YGNPESCIGKAAHKSVS 473

Query: 435 VTNNE 449
             N++
Sbjct: 474 CANDD 478


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +3

Query: 264 HCL--LKIKIHLHRYFETLMEDL 326
           HCL  + +++HLHR+ E + E+L
Sbjct: 619 HCLSNVSLQLHLHRFHELVSENL 641


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 293 TPIFRNINGR-FKIILLYVEQKKRSTVAKPNRGRALIYERRR 415
           T    N+N + F   +L V++ KRS    P  G+ + Y+RRR
Sbjct: 156 TSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRR 197


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 312 LMEDLKSYYYT*NRKKDLPLLSQIVDV 392
           LME + SY     RK D+P L  I DV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDV 260


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 259 LSVRLGADCSIPCYVHSNRSKD 194
           LSVRL      P +VH+NR  D
Sbjct: 610 LSVRLNGGNGFPGHVHNNREDD 631


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 246 NLTDNNHCLLKIKIHLHRYFETLMEDLKSYYYT 344
           ++ D++ CL ++K H  R  + L+ED +  Y T
Sbjct: 129 SMDDSDKCLRRLKSHKERLLK-LLEDAQKEYDT 160


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 317 H*CFEISV*MYLYL**AVIVVCEIGSGLQHP-MLCSLKSKQ 198
           H C  IS+ + L L    ++ C +G  + HP    SL+S Q
Sbjct: 688 HDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQ 728


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 233  AVRSQSHRQQSLPTKDKDTFTPIFRNINGRFKIILLY 343
            +++ + +R QSLP  +  T TPI   I+G  ++ LLY
Sbjct: 1240 SLQLELNRLQSLPVSNDQTDTPI---ISGSQEVQLLY 1273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,497
Number of Sequences: 5004
Number of extensions: 37818
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)