Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_I12
(457 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030254-1|AAH30254.1| 433|Homo sapiens chromosome 20 open read... 31 2.5
AL031658-5|CAI42581.1| 433|Homo sapiens chromosome 20 open read... 31 2.5
U66033-1|AAC51118.1| 572|Homo sapiens glypican-5 protein. 29 5.7
BC039730-1|AAH39730.1| 572|Homo sapiens glypican 5 protein. 29 5.7
AL163537-2|CAI13232.1| 572|Homo sapiens glypican 5 protein. 29 5.7
AL162456-1|CAI17090.1| 572|Homo sapiens glypican 5 protein. 29 5.7
AL157821-1|CAC34558.2| 572|Homo sapiens glypican 5 protein. 29 5.7
AL157363-1|CAH71865.1| 572|Homo sapiens glypican 5 protein. 29 5.7
AL138714-1|CAH70260.1| 572|Homo sapiens glypican 5 protein. 29 5.7
AF001462-1|AAC12261.1| 572|Homo sapiens glypican-5 protein. 29 5.7
BC130417-1|AAI30418.1| 551|Homo sapiens TRAF3IP3 protein protein. 29 10.0
AL049667-1|CAB41242.1| 531|Homo sapiens hypothetical protein pr... 29 10.0
AL022398-4|CAI95689.1| 156|Homo sapiens TRAF3 interacting prote... 29 10.0
AL022398-3|CAI95688.1| 182|Homo sapiens TRAF3 interacting prote... 29 10.0
AL022398-2|CAI95687.1| 551|Homo sapiens TRAF3 interacting prote... 29 10.0
>BC030254-1|AAH30254.1| 433|Homo sapiens chromosome 20 open reading
frame 160 protein.
Length = 433
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 206 SKQRFGWA*CGVLF-QSRGETIQACCA*CSWQCNDST 99
S R W+ CGV + SR +++ CC W C T
Sbjct: 392 SSYRITWSRCGVSWGPSRSSSLRCCCGSTGWGCPSRT 428
>AL031658-5|CAI42581.1| 433|Homo sapiens chromosome 20 open reading
frame 160 protein.
Length = 433
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 206 SKQRFGWA*CGVLF-QSRGETIQACCA*CSWQCNDST 99
S R W+ CGV + SR +++ CC W C T
Sbjct: 392 SSYRITWSRCGVSWGPSRSSSLRCCCGSTGWGCPSRT 428
>U66033-1|AAC51118.1| 572|Homo sapiens glypican-5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>BC039730-1|AAH39730.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>AL163537-2|CAI13232.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>AL162456-1|CAI17090.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>AL157821-1|CAC34558.2| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>AL157363-1|CAH71865.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>AL138714-1|CAH70260.1| 572|Homo sapiens glypican 5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>AF001462-1|AAC12261.1| 572|Homo sapiens glypican-5 protein.
Length = 572
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 360 LFFCSTYNNMILNLPLMFRNIGVNVSLSLVGSD 262
+ FCSTY NM L + +V L L G+D
Sbjct: 124 ILFCSTYRNMALEAAASVQEFFTDVGLYLFGAD 156
>BC130417-1|AAI30418.1| 551|Homo sapiens TRAF3IP3 protein protein.
Length = 551
Score = 28.7 bits (61), Expect = 10.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 104 NRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNITWDAAVRSQSHRQQSLPTK 277
++Y A LG HRE E++LH+ S++ + ++ + A+R + Q L K
Sbjct: 320 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRFLENEHQELQAK 377
>AL049667-1|CAB41242.1| 531|Homo sapiens hypothetical protein
protein.
Length = 531
Score = 28.7 bits (61), Expect = 10.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 104 NRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNITWDAAVRSQSHRQQSLPTK 277
++Y A LG HRE E++LH+ S++ + ++ + A+R + Q L K
Sbjct: 300 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRFLENEHQQLQAK 357
>AL022398-4|CAI95689.1| 156|Homo sapiens TRAF3 interacting protein
3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 10.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 104 NRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNITWDAAVRSQSHRQQSLPTK 277
++Y A LG HRE E++LH+ S++ + ++ + A+R + Q L K
Sbjct: 52 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRFLENEHQQLQAK 109
>AL022398-3|CAI95688.1| 182|Homo sapiens TRAF3 interacting protein
3 protein.
Length = 182
Score = 28.7 bits (61), Expect = 10.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 104 NRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNITWDAAVRSQSHRQQSLPTK 277
++Y A LG HRE E++LH+ S++ + ++ + A+R + Q L K
Sbjct: 56 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRFLENEHQQLQAK 113
>AL022398-2|CAI95687.1| 551|Homo sapiens TRAF3 interacting protein
3 protein.
Length = 551
Score = 28.7 bits (61), Expect = 10.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 104 NRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNITWDAAVRSQSHRQQSLPTK 277
++Y A LG HRE E++LH+ S++ + ++ + A+R + Q L K
Sbjct: 320 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRFLENEHQQLQAK 377
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,294,103
Number of Sequences: 237096
Number of extensions: 1209012
Number of successful extensions: 6694
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6694
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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