Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I12
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.22 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.51 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.90 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 423  YWHLRRSYIKARPRFGLATVDLFFCSTYNNMIL 325
            +WH R + IK RP      V LFF     N+ L
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDL 1015


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +2

Query: 26  VLCG-NKFLISYELTVLYGLISAKSKSNRYTAKNIKHSRLGLFHRETETRLHITPSQIFA 202
           ++CG  +F   +  TV+Y  +  K+          KHS          ++L I    +F 
Sbjct: 719 IVCGIQRFAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQLIICSGLVFV 778

Query: 203 SI*VNITW 226
            I +N  W
Sbjct: 779 QILINGVW 786


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 199 KDLAGRNVESCFSLAVKQSK-PAVLNVLGSVT 107
           + L  +N E CFSL  K  K P  L  +  VT
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIWDVT 566


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 150 NNPSLLCLMFLAV*RFDLLFAEIN 79
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 150 NNPSLLCLMFLAV*RFDLLFAEIN 79
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 220 YVHSNRSKDLAGRNVESCFSLAVKQSKPAVLNVLGSVTIR 101
           Y    RSK LAG  + + + LA   + P +L      T R
Sbjct: 146 YSRRRRSKRLAGLMIVAVWVLAGAITSPPLLGCFPRATNR 185


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 246 WERTAASHVMFTQIEAKIWLGVMWS 172
           WE      V++      IW GV W+
Sbjct: 207 WELAGTLAVVWIMCYFCIWKGVKWT 231


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 246 WERTAASHVMFTQIEAKIWLGVMWS 172
           WE      V++      IW GV W+
Sbjct: 260 WELAGTLAVVWIMCYFCIWKGVKWT 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,046
Number of Sequences: 438
Number of extensions: 2360
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)