Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I10
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   3.1  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   7.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   7.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.5  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 452 VKYSQSLDDPQMNLNKE*LCLRLICFGPNLFEI 354
           VKY QSLDD +       LCL +  F PN  EI
Sbjct: 91  VKYHQSLDDFKS------LCLNIFHFDPNTLEI 117


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 232 QRRQFGFYEISVNGHYVHLEDTILKFPKIKLHFXIVRYL 348
           ++  +  Y +S N HY H    I ++P I +H  + R L
Sbjct: 748 EKTDWHHYALSFN-HYTHFTSPIRRYPDIIVHRLLERSL 785


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 609  WQY*DQDGALAPSQFY--XHQKCVYALNKN 526
            WQ  D+ GA  PS+F+   +  C+Y L  +
Sbjct: 1180 WQSLDKPGAFIPSKFHFTANGSCIYVLKSS 1209


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 138 HKKFDSWTKSFHPHLV*IAQALIYKHTTQVFTKTAIRFLRDIGQ 269
           H K++S++  + P    ++ AL +   T +FT  A+   +DI Q
Sbjct: 465 HTKYESYSPLYMPMSYSMSTALNFAAVTAIFTHCALYNGKDIWQ 508


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 328 FXIVRYLVYISNKLGPKQINRRHNYSLFRFICGSSKLWLYF 450
           F + +Y+ Y S+      IN  H Y +  F  G S +  YF
Sbjct: 877 FILQKYIDYFSSHPHDSLINILHLYPIETFCFGMSAIGAYF 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,900
Number of Sequences: 5004
Number of extensions: 59168
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)