Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I09
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   3.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.4  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  

>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 401 VTSRTLELRMPKPKLHKDLSLTPPLRASLSLF 306
           V SRTLEL       HK ++L P L++ L +F
Sbjct: 493 VVSRTLELLAHIAISHKSVNLVPFLKSLLQMF 524


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -2

Query: 419  SQLKNKVTSRTLELRMPKPKLHKDLSLTPPLRASLSLFLTSLMRTVSAQKELTFLLLPRS 240
            ++LKN++     E+R+ +  L +  SL   L  SLS         + A+ EL  +L   S
Sbjct: 1393 NKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLDAKNELEHMLDDTS 1452

Query: 239  QKPSS 225
            +K SS
Sbjct: 1453 RKNSS 1457


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 136 FPRLNNTGHLDNTHTLXTYRYTLMCNSHKYE*LVTVIF 23
           F RL     L    +L  YRY ++  +HK++ +V  I+
Sbjct: 10  FTRLKKCATLLVQLSLLRYRYMVLAYNHKFDCIVVTIY 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,450
Number of Sequences: 5004
Number of extensions: 41116
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)