Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I07
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    30   0.31 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.41 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    29   0.95 
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   8.8  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   8.8  

>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 201 HKNSHYQDPVMHHIFHHIYA*HNHLH 278
           H N+H  D  +HH  HH +  H+H H
Sbjct: 284 HHNNHESDKDLHHEGHHHHHHHHHHH 309


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = -1

Query: 753 IVCLDVCYDNPNSLYRFGDGTTFSPINMLKRILDFFFHTKHAISKKTEFA---LITLQDA 583
           ++ +  C  + ++++   DG T S I  L++ + FF H    ISK  + A   +  +Q  
Sbjct: 510 LIIVYACIVSCSTVFMLFDGATPSEIVALEQDIKFFLHVLTKISKNWDLASKSINLIQKK 569

Query: 582 GACWTQNFTSNVKDLISAIDYAHAEEATSD 493
              +  N  +N  D    +D+++ ++ T D
Sbjct: 570 STMYDTNARANDTD----VDFSNDKQNTHD 595


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 231 LQDLDNGYSYVFEVSRNATKIH----DCIAKLLAHPLQRPLQQNTDYSFG 94
           ++  DN YS+V    R AT ++    DC+ + LAH L    +      FG
Sbjct: 634 IRGYDNYYSFVHNRGRFATYVYFIIKDCVLRTLAHKLSLGTRMKVIKKFG 683


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 289 NICIKIYLTSYILE----TWVFMRNYWNTIRSSI*NQKSDD 399
           +ICIK ++TSY++      + F +N    I S I + K+DD
Sbjct: 141 DICIKDFVTSYLVPYDDVRFFFYKNSKKVISSLIESSKTDD 181


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 354 VIPHEDPCFQYIRSQIYFYTDILLAHEDDCATHKCDEIYDALQDLDNGY 208
           VIPH++  FQ  RS+I+F +++ + + ++     C +    LQ    G+
Sbjct: 719 VIPHDNLNFQVGRSKIFFRSNV-IGNFEEAHRATCSKSTVLLQSAIRGF 766


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 463 NKTSYRNSYDETWRILTASSLYR 395
           ++ SY N YD+ WR   +S+LYR
Sbjct: 464 DEDSY-NVYDKPWRAAPSSTLYR 485


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 255 KCDEIYDALQDLDN--GYSYVFEV-SRNATKIHDCIAKLLAHPLQRPLQQNTDYSF 97
           K + +YDAL +LDN  G + +    S+ +T +  C+  L    ++ P +++   SF
Sbjct: 164 KSNWLYDALVELDNNMGENLIIHTSSQKSTFLLRCVGALSTTEIEYPNEKSVLESF 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,265
Number of Sequences: 5004
Number of extensions: 67522
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)