Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_I07
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   1.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   1.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.4  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 540 LISAIDYAHAEEATSDTFDFEKVYELI 460
           ++S + + +AEE  SD +D+  + E++
Sbjct: 10  ILSLLTWTYAEELYSDKYDYVNIDEIL 36


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 540 LISAIDYAHAEEATSDTFDFEKVYELI 460
           ++S + + +AEE  SD +D+  + E++
Sbjct: 10  ILSLLTWTYAEELYSDKYDYVNIDEIL 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 102 NSLYFVARASVVDVLTILQYNH 167
           N + F+  +SVV  + IL Y+H
Sbjct: 299 NCIMFMVASSVVSTILILNYHH 320


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 180 HFLIPQTHKNSHYQDPVMHHI 242
           HF  PQTHK + +   V  HI
Sbjct: 332 HFRSPQTHKMAPWVKRVFIHI 352


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 180 HFLIPQTHKNSHYQDPVMHHI 242
           HF  PQTHK + +   V  HI
Sbjct: 332 HFRSPQTHKMAPWVKRVFIHI 352


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 114 FVARASVVDVLTILQYNHVF**HFLIPQTHKNSHYQDPVMHHI 242
           FV    ++D  +I     V   HF  PQTH  + +   V  H+
Sbjct: 306 FVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHV 348


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 113 FCCKGLC 133
           FCCKG C
Sbjct: 457 FCCKGYC 463


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 125 PCNKIQTILSVQDTSM*NVKNXPLK 51
           PCNKI T L+     + NV   P K
Sbjct: 7   PCNKILTSLTRLRRHIQNVHTRPSK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,288
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)