Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_I04
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 332 1e-91
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 332 1e-91
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 332 1e-91
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 40 0.002
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 39 0.004
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 29 3.8
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 29 3.8
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 29 5.0
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 29 5.0
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 332 bits (817), Expect = 1e-91
Identities = 160/195 (82%), Positives = 179/195 (91%)
Frame = -1
Query: 786 DKMGGGSLXALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 607
+ +GGGSL ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINVGLSVSR
Sbjct: 315 NSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSR 374
Query: 606 VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQY 427
VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQY
Sbjct: 375 VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQY 434
Query: 426 VPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPES 247
VPM IEEQV +IY GV+G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQI+P++
Sbjct: 435 VPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQT 494
Query: 246 DASLKKIVTDFLATF 202
DA LK +V +FLATF
Sbjct: 495 DAQLKDVVVNFLATF 509
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 332 bits (817), Expect = 1e-91
Identities = 160/195 (82%), Positives = 179/195 (91%)
Frame = -1
Query: 786 DKMGGGSLXALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 607
+ +GGGSL ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINVGLSVSR
Sbjct: 307 NSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSR 366
Query: 606 VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQY 427
VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQY
Sbjct: 367 VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQY 426
Query: 426 VPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPES 247
VPM IEEQV +IY GV+G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQI+P++
Sbjct: 427 VPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQT 486
Query: 246 DASLKKIVTDFLATF 202
DA LK +V +FLATF
Sbjct: 487 DAQLKDVVVNFLATF 501
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 332 bits (817), Expect = 1e-91
Identities = 160/195 (82%), Positives = 179/195 (91%)
Frame = -1
Query: 786 DKMGGGSLXALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 607
+ +GGGSL ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINVGLSVSR
Sbjct: 342 NSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSR 401
Query: 606 VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQY 427
VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQY
Sbjct: 402 VGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQY 461
Query: 426 VPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPES 247
VPM IEEQV +IY GV+G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQI+P++
Sbjct: 462 VPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQT 521
Query: 246 DASLKKIVTDFLATF 202
DA LK +V +FLATF
Sbjct: 522 DAQLKDVVVNFLATF 536
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -1
Query: 771 GSLXALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 592
GS+ +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 326 GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSA 385
Query: 591 QTKAM 577
+ M
Sbjct: 386 IGEGM 390
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = -1
Query: 771 GSLXALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 592
GS+ +P++ D++ IP IT+GQI+++ +L + I P I+V S+SR+ +A
Sbjct: 338 GSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSA 397
Query: 591 QTKAM 577
+ M
Sbjct: 398 VGEGM 402
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 515 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 411
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 515 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 411
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 421 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 540
G L L+EE K S V + LC + R+ + K +L L
Sbjct: 649 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 688
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 421 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 540
G L L+EE K S V + LC + R+ + K +L L
Sbjct: 648 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 687
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,266
Number of Sequences: 27780
Number of extensions: 347501
Number of successful extensions: 1122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -