Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H24
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.3  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.0  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   4.0  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    27   4.0  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -1

Query: 391 KHFVACIVNIV--FYLTLFLNKFIIFFSTSTPDLLFHHFYNEKQ 266
           ++FV+C++ I+  ++LTL+L   +I   TS+   L H   N+K+
Sbjct: 454 EYFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQKE 497


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 364 IVFYLTLFLNKFIIFFSTSTPDLLFHHFYNEKQSVL 257
           +V+++ +FL +   FF  S    L+H    EK+  L
Sbjct: 85  VVYWIRVFLKRIYTFFVHSARVFLYHFLNEEKEFTL 120


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 155 YIWYCVQKCFGRHTY 199
           Y+W C+QKCF    Y
Sbjct: 109 YVWDCLQKCFDAKLY 123


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 54  GLKLLAACANSTNSSSFLQIVDYSFPHGCKF 146
           GLK L    N        +I++Y+  HGC F
Sbjct: 15  GLKSLTWTENPVPDEEAFRIMNYALSHGCSF 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,895
Number of Sequences: 5004
Number of extensions: 66325
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)