Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H24
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140...    30   1.8  
01_01_0205 + 1764034-1767601,1767934-1767944                           30   2.4  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    29   4.1  
06_01_1194 + 10275700-10275901,10276263-10276352,10277097-102771...    28   9.6  

>11_01_0176 -
           1403284-1403553,1404313-1404468,1404569-1404787,
           1405198-1405440,1405539-1405695,1406186-1406226
          Length = 361

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3

Query: 15  LKFVCISNLCGNTGLKLLAAC 77
           LK VCI   CGNTG   LA C
Sbjct: 295 LKMVCIFGFCGNTGQVELAKC 315


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 130 GNE*STICKKDELLVELAHAASNFKPVFPHKLLMQTNFKIIV 5
           GN   +IC    L++ LAH  +NF   FP  L+ QT F+ I+
Sbjct: 834 GNIPHSICNSSLLVLNLAH--NNFSGPFPSCLMEQTYFRNIL 873


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 498  SQEVGLICVYSGQSTYSLNHHIRDIDLCIMLLLVNKNILLH 376
            S  VGL+C+ +G+  Y+ N ++R    CI+ +   ++  LH
Sbjct: 1130 SLRVGLLCLLAGKKAYN-NVYLRHNVFCILQIAAGRSPTLH 1169


>06_01_1194 +
           10275700-10275901,10276263-10276352,10277097-10277125,
           10277316-10277362,10277683-10277735,10277949-10277962
          Length = 144

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -3

Query: 236 WIEELQVKIQGVHMCVVQSIFEHSTIYNLMKL 141
           W+   +++I G+ +C+    FE + +YN++++
Sbjct: 83  WLFLAEIQIGGLELCLCDHTFELNMVYNIIEV 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,026,612
Number of Sequences: 37544
Number of extensions: 364954
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)