Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H21
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   0.96 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   2.2  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   3.9  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   5.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   6.7  
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...    25   6.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   6.7  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 79  FVQYTNYPSGVPAPSTRKGREVQTND 156
           F Q++N PS   AP+T+  + V+T D
Sbjct: 568 FAQFSNLPSQSTAPATKPMKPVRTGD 593


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 423 ADTLQTKTHYCFTAEIGRVVVPIRADSQEVLPPVKNTY 310
           + T+     +CF+  +G +  P+R  +Q++  P+++ Y
Sbjct: 239 SSTVSNLKRFCFSESLGHIFAPLRFQNQQL--PLQHVY 274


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 357 IRADSQEVLPPVKNTYKKTAYIQVPKNTGTVGLPSNI*PARWKIFLSSFKPSTGS 193
           IR D   V+  V  T +KT +     N G V +  N+  + +    S F P   +
Sbjct: 664 IRKDDHLVVSKVTKTTRKTGFGGFSANKGAVAIEMNVCDSDFCFVSSHFAPKVNN 718


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +2

Query: 17  T*TKILDFLRSSRINITIL---CISYN 88
           T TKI DFLR+ R  + +L   C+ YN
Sbjct: 159 TYTKIFDFLRNGRAPLQVLVHHCMLYN 185


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 8   SLGT*TKILDFLRSSRINI-TILCISYNILTTLQGYRRQVQGKVVKSKQM 154
           SLG  T+ LDFL S+ +++   L  +  +L    G   +  G ++K+K +
Sbjct: 455 SLGFLTRALDFLESAHMSVGPELLNNIAVLQYHLGLIPEAHGNIIKAKSV 504


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 418 YPSNQNALLLHGRNRQGGGTYPRGLTRGPTTS 323
           YP++   + L+ ++ Q   TYP+ L   P+++
Sbjct: 404 YPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSA 435


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 62  ITILCISYNILTTLQGYRRQVQGKVVKSKQ 151
           ++ILC+    +TTL G+R Q Q  VV  ++
Sbjct: 10  VSILCVGSPSITTLLGWRLQ-QSSVVTCQE 38


>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 381 EIGRVVVPIRADSQEVLPPVKNTYKKTAYIQVPKNTGTVGLPSNI 247
           E G  ++        +L  +    K+TA ++VP N  T+G  SN+
Sbjct: 151 ETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNL 195


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 14   GT*TKILDFLRSSRINITILCISYNILTTLQGYRRQV 124
            GT   ILD L   ++ I+I+   +N     +GYR ++
Sbjct: 1186 GTLACILDLLSQGKLQISIVGSKFNEYGLSEGYRTRL 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,859
Number of Sequences: 5004
Number of extensions: 43259
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)