Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H21
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0625 + 19438768-19438889,19438897-19439065,19439131-194391... 28 3.8
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 28 3.8
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 27 5.0
08_02_1461 - 27299891-27301870 27 6.6
08_02_0719 + 20388246-20390756,20391159-20391263 27 6.6
12_01_0185 + 1366715-1366882,1366985-1367039,1368563-1368753,136... 27 8.7
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604... 27 8.7
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331... 27 8.7
01_01_0790 + 6135910-6136045,6136316-6136497,6136604-6136749,613... 27 8.7
>08_02_0625 +
19438768-19438889,19438897-19439065,19439131-19439174,
19439431-19440061
Length = 321
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 345 SQEVLPPVKNTYKKTAYIQVPKNTGTVGLPSNI*PARWKIFLSSFKPSTGSSL 187
+++ L P N Y AYI++ K T + S+I P+ +K S G +L
Sbjct: 63 TEDFLTPSLNCYVTNAYIRIDKVTAVASIDSSIYPS-YKKSACKILTSAGGTL 114
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 213 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF 305
K KGR + L CS+ R C+SE +F
Sbjct: 366 KNKGRMARYLANKCSIASRIDCYSESATAVF 396
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 213 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF 305
+ KGR + L CS+ R C+SEL +F
Sbjct: 384 RNKGRIARYLANKCSIASRIDCYSELNTSVF 414
>08_02_1461 - 27299891-27301870
Length = 659
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 394 LLHGRNRQGGGTYPRGLTRGPTTSK 320
LL GR R GGG + RGL P S+
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVSR 314
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 322 KKHIQKNSIYTSSEKHWDRRSTEQYLTSSVEDLP 221
K H Q +SI + E H D + + L +S+ +LP
Sbjct: 382 KDHSQWSSIISELESHGDLGAATEILETSINELP 415
>12_01_0185 +
1366715-1366882,1366985-1367039,1368563-1368753,
1369882-1369951,1370027-1370172,1370612-1370762,
1371228-1371346,1371482-1371553,1372546-1372649,
1373093-1373285,1373501-1373644,1373706-1373792,
1373967-1374065
Length = 532
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 293 IYAVFLYVFFTGGRTS-CESARIGTTTLPI 379
+ VFL +FF GG +S CE+ + T +L +
Sbjct: 9 VVVVFLVLFFVGGGSSRCEAETLETASLHV 38
>04_03_0888 -
20559435-20559565,20559674-20559740,20560217-20560477,
20560783-20560848,20560971-20561019,20561441-20561491,
20561568-20561620,20561743-20561794,20561867-20561955,
20562044-20562135,20562298-20562351,20563411-20563462,
20563775-20563963
Length = 401
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 292 TSSEKHWDRRSTEQYLTSSVEDLP 221
T+SE WD+ T +L + D P
Sbjct: 357 TASEMQWDQIDTNDFLAEEISDTP 380
>02_02_0661 -
12731005-12731238,12732756-12732884,12732969-12733193,
12733302-12733478,12733576-12733788
Length = 325
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 194 EPVEGLKDERKIFHRAG*ILLGRPTVPVFF 283
+P G K R+++ A +G+PTVPV +
Sbjct: 104 DPFNGAKTIRELYEIASPNYIGKPTVPVLW 133
>01_01_0790 +
6135910-6136045,6136316-6136497,6136604-6136749,
6136836-6137103,6137256-6137558,6137657-6137905
Length = 427
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 159 CVICLDFTTFPCTWRRYP*RVVSILYEMQSIVILILD 49
CVI FT+F T+ + V +LY + +V+ ILD
Sbjct: 385 CVIMGLFTSFRTTFPLWTCLVAYMLYPLSLVVVYILD 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,600
Number of Sequences: 37544
Number of extensions: 282907
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -