Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H21
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 29 1.5
U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine rece... 29 1.5
Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 2.6
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine re... 28 2.6
U13875-8|AAN63443.1| 633|Caenorhabditis elegans Hypothetical pr... 27 7.9
U13875-7|AAN63444.1| 635|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 27 7.9
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 27 7.9
>Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical
protein T14G8.2 protein.
Length = 347
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 343 TRGPTTSKKHIQKNSIYTSSEKHWD 269
T GP T K H+ KN+ +T S+ H D
Sbjct: 83 TIGPVTEKAHVFKNTWWTHSKNHRD 107
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 213 KTKGRSSTELVKYCSVDRRSQCFSE 287
K KGR S L CS+ R CFSE
Sbjct: 369 KNKGRVSRYLANKCSIAARVDCFSE 393
>U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein36 protein.
Length = 300
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 201 WKA*KTKGRSSTELVKYCSVDRRSQCFSELVYMLFFCMCFLLVVGPLVSP 350
WK K + + +D Q FS+ +Y+L CF+++ + +P
Sbjct: 190 WKVRKVRSQHGKHKFTNKEIDFLKQSFSQAIYLLVTTSCFVIIPMYITNP 239
>Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical
protein F53A2.1 protein.
Length = 859
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 270 SQCFSELVYMLFFCMCFLLVVGPLVSPRG*VPPPC 374
S FS ++ L+FC GPLVSP G +P C
Sbjct: 33 STTFSSIILSLYFC-------GPLVSPMGPLPARC 60
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 368 WWYLSARTHKRSYHQ*KTHTKKQH 297
WWY A K YH+ T K+ H
Sbjct: 880 WWYSLAADQKAEYHKLATQVKEAH 903
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 368 WWYLSARTHKRSYHQ*KTHTKKQH 297
WWY A K YH+ T K+ H
Sbjct: 880 WWYSLAADQKAEYHKLATQVKEAH 903
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 368 WWYLSARTHKRSYHQ*KTHTKKQH 297
WWY A K YH+ T K+ H
Sbjct: 115 WWYSLAADQKAEYHKLATQVKEAH 138
>AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine
receptor, class n protein1 protein.
Length = 361
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 274 SVFRNLYICCFF-VCVFYWW*DLL 342
+VF ++ CCF VC+FY W +L
Sbjct: 111 TVFTSINDCCFLRVCIFYQWTHIL 134
>U13875-8|AAN63443.1| 633|Caenorhabditis elegans Hypothetical
protein C26E6.7a protein.
Length = 633
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 95 TTLQGYRRQVQGKVVKSKQMTHSIYHFQK 181
TTLQ +R+ + K++KS Q + HFQK
Sbjct: 222 TTLQEKKRKKRKKILKSIQEILWLLHFQK 250
>U13875-7|AAN63444.1| 635|Caenorhabditis elegans Hypothetical
protein C26E6.7b protein.
Length = 635
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 95 TTLQGYRRQVQGKVVKSKQMTHSIYHFQK 181
TTLQ +R+ + K++KS Q + HFQK
Sbjct: 224 TTLQEKKRKKRKKILKSIQEILWLLHFQK 252
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 230 FHRAG*ILLGRPTVPVF----FGTCIYAVFLYVFF 322
FHR+G + + R P+F +G C F+ +F+
Sbjct: 163 FHRSGCVSIWRKVCPLFRGIGYGICCICTFIAIFY 197
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 230 FHRAG*ILLGRPTVPVF----FGTCIYAVFLYVFF 322
FHR+G + + R P+F +G C F+ +F+
Sbjct: 163 FHRSGCVSIWRKVCPLFRGIGYGICCICTFIAIFY 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,324
Number of Sequences: 27780
Number of extensions: 248295
Number of successful extensions: 630
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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