Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H21
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 147 LDFTTFPCTWRRYP 106
           +D  T PCTW   P
Sbjct: 294 IDANTKPCTWAARP 307


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 147 LDFTTFPCTWRRYP 106
           +D  T PCTW   P
Sbjct: 294 IDANTKPCTWAARP 307


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 147 LDFTTFPCTWRRYP 106
           +D  T PCTW   P
Sbjct: 294 IDANTKPCTWAARP 307


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 428  GRPIPFKPKRI 396
            GRP+P +P+R+
Sbjct: 1362 GRPVPERPERV 1372


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 298 IYTSSEKHWDRRST 257
           +Y   E+H++RR+T
Sbjct: 239 LYQQPERHYERRAT 252


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 412 SNQNALLLHGRNRQGGGTYPRGLTRGPTTSKK 317
           + +NA+LL GR+++       G   GPT ++K
Sbjct: 366 TKENAMLLSGRSQKS----TTGPPPGPTPAQK 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 412  SNQNALLLHGRNRQGGGTYPRGLTRGPTTSKKHIQKNSIYTSSEKH 275
            S  +++LLH ++   GG    G T    T+  ++ +  +   +  H
Sbjct: 1415 STSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSH 1460


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -1

Query: 412  SNQNALLLHGRNRQGGGTYPRGLTRGPTTSKKHIQKNSIYTSSEKH 275
            S  +++LLH ++   GG    G T    T+  ++ +  +   +  H
Sbjct: 1411 STSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSH 1456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,629
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)