Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H20
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   260   1e-70
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   258   4e-70
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    91   1e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    48   1e-06
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.17 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   0.89 
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   4.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.8  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  260 bits (637), Expect = 1e-70
 Identities = 117/172 (68%), Positives = 137/172 (79%)
 Frame = -1

Query: 593 VTYAPVIFAEKAYHEQLSVAEITNAXFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 414
           VTY+P++ A KA+HE  SV EITN  FEP NQMVKCDPR G+YMA C+LYRGDV+P+DV 
Sbjct: 274 VTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQ 333

Query: 413 AAIATIKTKRTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 234
           AA+ +IK++RTIQ VDWCPTGFK+GI Y+PP  VPG  +AKV RAVCMLSNTT+IAEAW+
Sbjct: 334 AAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWS 393

Query: 233 RLDHKXDLMYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMDSAE 78
           RLDHK DLMY+KRAFVHWYV             EDLAALE+DYEEVG DS +
Sbjct: 394 RLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMD 445


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  258 bits (632), Expect = 4e-70
 Identities = 118/172 (68%), Positives = 135/172 (78%)
 Frame = -1

Query: 593 VTYAPVIFAEKAYHEQLSVAEITNAXFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 414
           VTYAP++ A KA+HE  SV EITN  FEP NQMVKCDPR G+YMA C+LYRGDV+P+DV 
Sbjct: 270 VTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQ 329

Query: 413 AAIATIKTKRTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 234
           AA+ TIK KRTIQ VDWCPTGFK+GI  +PP  + G ++AKV RAVCMLSNTT+IAEAW+
Sbjct: 330 AAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWS 389

Query: 233 RLDHKXDLMYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMDSAE 78
           RLDHK DLMY+KRAFVHWYV             EDLAALE+DYEEVG DS E
Sbjct: 390 RLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSME 441


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 3/175 (1%)
 Frame = -1

Query: 593 VTYAPVIFAEKAYHEQLSVAEITNAXFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 414
           V +AP+     +  + +SV E+T   F+  N MV  DPRHG+Y+    L+RG V  K+V+
Sbjct: 268 VGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVD 327

Query: 413 AAIATIKTKRTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 234
             I +++TK +   V+W P      +   PP      DL   + +   + N+T+I E + 
Sbjct: 328 EQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFR 379

Query: 233 RLDHKXDLMYAKRAFVHWYV---XXXXXXXXXXXXXEDLAALEKDYEEVGMDSAE 78
           RL  +   M+ ++AF+HWY                  DL +  + Y+E G+D  +
Sbjct: 380 RLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGD 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
 Frame = -1

Query: 542 SVAEITNAXFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQXVD 366
           +V ++      P NQMV  +P +   +++   + +G+  P DV+ ++  I+ +R    + 
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350

Query: 365 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKXDLMYAKRAFV 186
           W P   +V ++ + P +     ++ +     ML+N T+IA  + R   + D +  + AF+
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405

Query: 185 HWY 177
             Y
Sbjct: 406 EQY 408


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 442 VVTSYPRM*TRPSLPSKPSVLSNXSTGVQPVSRSVSTTSHPPWCP 308
           VV   P +  RP++P  P  LS     V PV+  V +   PP  P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 442 VVTSYPRM*TRPSLPSKPSVLSNXSTGVQPVSRSVSTTSHPPWCP 308
           VV   P +  RP++P  P   S       PV   V +   PP  P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 402 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEXCVCDLGDGK 545
           S G   +LGY ++     A++V+A + V   HL+ G      D  + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 425 WVRRHHGTAYSKPCTCHDGG 484
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 409 PSLPSKPSVLSNXST--GVQPVSRSVSTTSHPPW 314
           P  PS+P+++SN ST  G+Q V   V   +   W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 415 TRPSLPS-KPSVLSNXSTGVQPVSRSVSTTSHP 320
           T P  PS  PS+ S+  T V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPT-VKPFSSQNSTTSNP 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,140
Number of Sequences: 5004
Number of extensions: 43375
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)