Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H16
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   3.2  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   4.2  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 217 YDYICM*IYEYIIVFIHTYMCILYYYHDIIFCM 315
           YD IC   Y+Y  + +   + I+YYY+ ++ C+
Sbjct: 48  YDRIC---YDYKNILLKYELFIIYYYYYLLICL 77


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 226 ICM*IYEYIIVFIHTYMCILYYYHDIIFCMLLYVIIYITY 345
           IC+ +  +I++ +  + C    ++  +F +LL V I + Y
Sbjct: 168 ICLFVINHILILLGYFQCSYSVFYASVFYILLGVFIRVFY 207


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 194 NCKYIYCCSRTSNH 153
           NC Y++CC+  S+H
Sbjct: 103 NCGYLFCCNHESDH 116


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 206 KNITNCKYIYCCSRTSNHHTQSLGSGLWTLSI 111
           K + NCKY++      + H    G   W+L +
Sbjct: 83  KKLMNCKYLFMPINDLDKHAAGSGGSHWSLMV 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,429
Number of Sequences: 5004
Number of extensions: 51015
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)