Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H14
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 181 1e-46
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.84
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 28 1.5
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 28 1.5
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 4.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 5.9
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 5.9
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.8
>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 181 bits (440), Expect = 1e-46
Identities = 93/160 (58%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Frame = -3
Query: 762 KVMKNILDNKVEKVVVSNRLVESPCCIVTAQYGWSANMERIMKAQALRDTSTMGYMAAKK 583
K +K IL +KVEKVVVSN++V SPC + T QYGWSANMERIMKAQALRDTS YM+++K
Sbjct: 548 KQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALRDTSMSAYMSSRK 607
Query: 582 HLEINPDHSIVETLRQKAEAD-KNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRM 406
EINP I+ L++K E + D++VKDL +LYETALLSSGFTLD+P +A RI R+
Sbjct: 608 TFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRL 667
Query: 405 IKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 286
I LGL IDE+E +EE ++ V E +A+ S+MEEVD
Sbjct: 668 ISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKMEEVD 704
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 369 IQVEEPASGDVPPLEGDADDASRMEEVD 286
IQ + P D PP++ DAD+ EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 33 LIMCNTALRTFSKVAYITNSNKTKIQYCKYSGTIMTLL*KKSTENHFDYL 182
L+ N + FSK++ I+ S I+YCK G + T +H D+L
Sbjct: 6 LVAINFEQQIFSKISEISESVGRAIRYCKEDGKVEGC----ETASHVDFL 51
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 654 NMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 532
N R M + L + ++A KK LE+N IV TLRQ+
Sbjct: 117 NTIRSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQE 157
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +1
Query: 637 HDTFH--VGRPSILSSNNT-----ARRLHKSVRDNNFLNFVVQDVLHH 759
H+TF VG +++S+NT RL K + + F NF+ +++LH+
Sbjct: 197 HETFSHPVGCLIVITSHNTNPMATVMRLFKEINNAPFPNFISKEILHY 244
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = -3
Query: 537 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 358
Q AE + + ++ +L+ + + + +D ++ + ++ I ED+ +VE
Sbjct: 22 QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81
Query: 357 EPASGDVPPLEGDADDASRMEE 292
+P SG+ L + D+ + E+
Sbjct: 82 KPVSGNQFSLLSEEDEVDKKEK 103
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 549 ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 379
E+ R+K E+DKN ++ K + E+ G + D V R+YR G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 325 LQWRHVSRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 435
L+W + RS N+N ++ Q HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 635 RLRLYVTHPQWDTWLRRSIWKSIL 564
+L +Y + QW+ W R WKSI+
Sbjct: 8 KLHIYASPEQWEKWSPR--WKSIV 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,129
Number of Sequences: 5004
Number of extensions: 65274
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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