Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H14
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   2.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 642 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 526
           +M   +L + +T+GYMA +  +  N    I E+++   E
Sbjct: 292 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 330


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 642 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 526
           +M   +L + +T+GYMA +  +  N    I E+++   E
Sbjct: 292 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 330


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 642 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 526
           +M   +L + +T+GYMA +  +  N    I E+++   E
Sbjct: 231 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 269


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 291 LPPCEMHHQHHP 326
           LPP    HQHHP
Sbjct: 312 LPPSYHPHQHHP 323


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 309 HHQHHPPMAARLQKQALQ-PESAHLHQY 389
           HHQH  P+A      A+Q   + H H +
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHHPH 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,271
Number of Sequences: 438
Number of extensions: 4358
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)