Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H13
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 261 8e-71
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 45 2e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.050
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.82
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.5
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 4.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 4.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 261 bits (640), Expect = 8e-71
Identities = 123/239 (51%), Positives = 164/239 (68%)
Frame = -1
Query: 837 YFVKIIQLLDEYPKCFIVGADNVXXXXXXXXXXXXXXXXIVLMGKNTMMRKAIKDHLDNN 658
YF K+ L ++Y F+V DNV ++MGKNTM+R+A++ +++
Sbjct: 11 YFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDM 70
Query: 657 PALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP 478
P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P
Sbjct: 71 PELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEP 130
Query: 477 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQV 298
KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +
Sbjct: 131 GKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTI 190
Query: 297 YDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLAI 121
YD G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N +KNL+A+
Sbjct: 191 YDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAV 249
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 44.8 bits (101), Expect = 2e-05
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Frame = -1
Query: 717 VLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 553
+ MGK +M KA+ ++H +N L KLL G VG +FT EV E+ V
Sbjct: 65 IFMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFV 120
Query: 552 QAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISKGTIE 415
Q AR GA+AP + VIPA G P + + L +PT + G +
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180
Query: 414 IINDVHILKPGDKVGASEATLLNMLNI--SPFSYGLV 310
++ D + G ++ + + LL + I + F GL+
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLL 217
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.050
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = -2
Query: 836 TSLRSSNXWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTI 657
T + SSN S+ + P+T S SV PV+ + T C TT T++
Sbjct: 507 TPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-----TTSTSV 561
Query: 656 QPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQL-VPVPLPHCQSS 507
+ +S T++S +P ++ + TNC + S L P+ P+ SS
Sbjct: 562 PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSS 612
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.82
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 716 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 609
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 410 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 535
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 572 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 697
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 403 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 525
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 64 LMNSLXGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 243
L + G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 244 ILWFDVQNF 270
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 476 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 646
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 647 SRAGL 661
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 557 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 718
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,826
Number of Sequences: 5004
Number of extensions: 72963
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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