Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H12
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 111 1e-25
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 95 1e-20
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 95 1e-20
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 95 1e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 88 2e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 48 2e-06
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 28 1.3
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 28 1.3
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 7.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 7.1
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 25 9.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 9.4
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 111 bits (266), Expect = 1e-25
Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 1/204 (0%)
Frame = -3
Query: 787 ERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSIN-DL 611
ER V P + I +K G+ + G+I G +KK VLV P + EV ++ D
Sbjct: 462 ERKVNAPFIMPIASKYKDLGT--ILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE 519
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFP 431
+ + GDQV L + G D +V GY+L+ V TTRF A+I + + +T G+
Sbjct: 520 EISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYS 578
Query: 430 VLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDV 251
++H + VE + KL L K T KK P + E+ET P+C+ER++D
Sbjct: 579 CVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDY 637
Query: 250 KELGRVMLRVAGVTIAAGLVTDII 179
+ +GR LR G T+A G V I+
Sbjct: 638 QYMGRFTLRDQGTTVAVGKVVKIL 661
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 95.1 bits (226), Expect = 1e-20
Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P RP KPLR+ + DV+K G G GR+ GV+K G V P EV+S+ ++
Sbjct: 236 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHE 295
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSV-TTRFEARIVVFNVKVPITKGF 434
+ + GD V + V ++++ G + D + F A++++ N I+ G+
Sbjct: 296 SLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGY 355
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
++ + + +L + + +G+ I++ P+ + + + ++ S+P+C+E + D
Sbjct: 356 SPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTD 415
Query: 253 VKELGRVMLRVAGVTIAAGLV 191
LGR +R T+A G++
Sbjct: 416 YAPLGRFAVRDMRQTVAVGVI 436
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 95.1 bits (226), Expect = 1e-20
Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P RP KPLR+ + DV+K G G GR+ GV+K G V P EV+S+ ++
Sbjct: 236 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHE 295
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSV-TTRFEARIVVFNVKVPITKGF 434
+ + GD V + V ++++ G + D + F A++++ N I+ G+
Sbjct: 296 SLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGY 355
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
++ + + +L + + +G+ I++ P+ + + + ++ S+P+C+E + D
Sbjct: 356 SPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTD 415
Query: 253 VKELGRVMLRVAGVTIAAGLV 191
LGR +R T+A G++
Sbjct: 416 YAPLGRFAVRDMRQTVAVGVI 436
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 95.1 bits (226), Expect = 1e-20
Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P RP KPLR+ + DV+K G G GR+ GV+K G V P EV+S+ ++
Sbjct: 236 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHE 295
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSV-TTRFEARIVVFNVKVPITKGF 434
+ + GD V + V ++++ G + D + F A++++ N I+ G+
Sbjct: 296 SLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGY 355
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
++ + + +L + + +G+ I++ P+ + + + ++ S+P+C+E + D
Sbjct: 356 SPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTD 415
Query: 253 VKELGRVMLRVAGVTIAAGLV 191
LGR +R T+A G++
Sbjct: 416 YAPLGRFAVRDMRQTVAVGVI 436
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 87.8 bits (208), Expect = 2e-18
Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 1/204 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSIN-D 614
PE+P KPLR+SI+DV++ S V+GR+ G ++ + ++E A V+++ N D
Sbjct: 397 PEKPYRKPLRLSIDDVYRSPRS-VTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSD 455
Query: 613 LTNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGF 434
++ A AGD VTL L+ +++ + G ILS+ V F A I F++ PI G
Sbjct: 456 PSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDIHGPILSGS 515
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
+++H V S ++ K+ + +K + + +K R L V + ++ P+C+ ++
Sbjct: 516 TLVLHLGRTVTSVSL-KIVTVNNKRSRHIASRK-RAL----VRISFLDGLFPLCLA--EE 567
Query: 253 VKELGRVMLRVAGVTIAAGLVTDI 182
LGR +LR +G T+AAG+V ++
Sbjct: 568 CPALGRFILRRSGDTVAAGIVKEL 591
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = -3
Query: 793 VPERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVC--PTKEMAEVRSLSI 620
+PER P ++I DVF +G G V+GR+ G LKKG ++ + + V + +
Sbjct: 244 LPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEM 303
Query: 619 NDLTNNVAFAGDQVTLTLSGVDMQNVSVGYILSDP 515
+ A AGD L L + + + G I++ P
Sbjct: 304 FKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQP 338
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 787 ERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
E + KPL + +++ G GS + I + DK+L+CP S IND+
Sbjct: 71 ELSITKPL--TPDNICMGVGSDEIIDSLIRISCIPGKDKILMCPPSYGMYTVSAKINDV 127
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSI 620
P+ PLR + D + + G RI G +KKG KV+ T EV+ + I
Sbjct: 236 PKGSENAPLRCLLIDSWYNSYQGVIGLVRIMEGFIKKGGKVMSVNTGRKYEVQQVGI 292
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 509 AGFCYNTFRGPNSSFQC*STNNKRLSG 429
AG+C+ F P+ + S NNK + G
Sbjct: 134 AGYCFVEFASPHEASSAMSMNNKPIPG 160
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 403 ESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVK 248
+S+NI+ + +L E I+ R L NN A + ++ +R C+E DVK
Sbjct: 653 QSSNILDIVSLEDTPNFEEIR---RTLENNHCARLYLKQARHPCLEAQDDVK 701
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 516 GSLSMYPTDTFCMSTPDKVN---VTWSPANATLLVRSFILKLLTSAISFVGQTNTLSPFF 686
G +SM D S K + V W P N V S K L + +F+G + ++ F
Sbjct: 319 GKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIF 378
Query: 687 R 689
R
Sbjct: 379 R 379
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +3
Query: 495 VTETCSIGSLSM---YPTDTFCMSTPDKVNVTWSPANATLLVRSFILKLLTSA--ISFVG 659
VTET S+ YP D P KV++ + N+ + S + L TSA +G
Sbjct: 59 VTETFQSNRSSLVPTYPVDENANKLPPKVSIAFILINSLMSDMSLAVALPTSASYTQSLG 118
Query: 660 QTNTLS 677
TN S
Sbjct: 119 GTNAFS 124
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 373 LLSKSTGELIKKKPRCLGNNSVAVVEIETSRP 278
LLS STGE+ KK R +N + +++RP
Sbjct: 238 LLSDSTGEIRKKISRAQTDNIKGITYGDSNRP 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,238
Number of Sequences: 5004
Number of extensions: 52256
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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