Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H12
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 131 6e-31
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 131 6e-31
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 105 5e-23
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 105 5e-23
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 105 5e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 101 4e-22
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 50 1e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 50 2e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 50 2e-06
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 50 2e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 50 2e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.077
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.077
Z83244-7|CAB05829.1| 318|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 28 8.9
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein
K07A12.4b protein.
Length = 592
Score = 131 bits (316), Expect = 6e-31
Identities = 76/208 (36%), Positives = 116/208 (55%), Gaps = 3/208 (1%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P+ P PLRI I+DV K + VSG+I G ++K DKV + + A V+ + ND
Sbjct: 385 PQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECANNDG 444
Query: 610 TNNVAFAGDQVTLTLSGV-DMQNVSVGYIL--SDPIEQVSVTTRFEARIVVFNVKVPITK 440
+ + FAGD + LTL G + +++ G ++ + P + + + +FE R+V F + +PI K
Sbjct: 445 SRH-CFAGDYILLTLQGTFEPESIQTGSVVVRAGP-DTLIPSKKFEVRLVAFEIAMPIIK 502
Query: 439 GFPVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERY 260
G ++ SL L ++KS GE++KK PR + + AVVEIET I IE +
Sbjct: 503 GAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETF 562
Query: 259 KDVKELGRVMLRVAGVTIAAGLVTDIIS 176
+ LGRV R G TIAAG+V +I+
Sbjct: 563 TSCRALGRVTFRAGGNTIAAGIVEKVIT 590
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein
K07A12.4a protein.
Length = 610
Score = 131 bits (316), Expect = 6e-31
Identities = 76/208 (36%), Positives = 116/208 (55%), Gaps = 3/208 (1%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P+ P PLRI I+DV K + VSG+I G ++K DKV + + A V+ + ND
Sbjct: 403 PQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECANNDG 462
Query: 610 TNNVAFAGDQVTLTLSGV-DMQNVSVGYIL--SDPIEQVSVTTRFEARIVVFNVKVPITK 440
+ + FAGD + LTL G + +++ G ++ + P + + + +FE R+V F + +PI K
Sbjct: 463 SRH-CFAGDYILLTLQGTFEPESIQTGSVVVRAGP-DTLIPSKKFEVRLVAFEIAMPIIK 520
Query: 439 GFPVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERY 260
G ++ SL L ++KS GE++KK PR + + AVVEIET I IE +
Sbjct: 521 GAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETF 580
Query: 259 KDVKELGRVMLRVAGVTIAAGLVTDIIS 176
+ LGRV R G TIAAG+V +I+
Sbjct: 581 TSCRALGRVTFRAGGNTIAAGIVEKVIT 608
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 105 bits (251), Expect = 5e-23
Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P+RP +PLR+ + DV+K G G GR+ G++K G V P EV+S+ ++
Sbjct: 204 PQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHE 263
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTR-FEARIVVFNVKVPITKGF 434
+ A GD V + V ++++ G + SD + + R F A++++ N I+ G+
Sbjct: 264 SLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGY 323
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
++ + + +LK + + TG+ ++ P+ L + +VE+ ++P+C+E + D
Sbjct: 324 TPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTD 383
Query: 253 VKELGRVMLRVAGVTIAAGLVTDI 182
LGR +R T+A G++ +
Sbjct: 384 YAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 105 bits (251), Expect = 5e-23
Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P+RP +PLR+ + DV+K G G GR+ G++K G V P EV+S+ ++
Sbjct: 238 PQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHE 297
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTR-FEARIVVFNVKVPITKGF 434
+ A GD V + V ++++ G + SD + + R F A++++ N I+ G+
Sbjct: 298 SLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGY 357
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
++ + + +LK + + TG+ ++ P+ L + +VE+ ++P+C+E + D
Sbjct: 358 TPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTD 417
Query: 253 VKELGRVMLRVAGVTIAAGLVTDI 182
LGR +R T+A G++ +
Sbjct: 418 YAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 105 bits (251), Expect = 5e-23
Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Frame = -3
Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
P+RP +PLR+ + DV+K G G GR+ G++K G V P EV+S+ ++
Sbjct: 238 PQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHE 297
Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTR-FEARIVVFNVKVPITKGF 434
+ A GD V + V ++++ G + SD + + R F A++++ N I+ G+
Sbjct: 298 SLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGY 357
Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
++ + + +LK + + TG+ ++ P+ L + +VE+ ++P+C+E + D
Sbjct: 358 TPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTD 417
Query: 253 VKELGRVMLRVAGVTIAAGLVTDI 182
LGR +R T+A G++ +
Sbjct: 418 YAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 101 bits (243), Expect = 4e-22
Identities = 54/203 (26%), Positives = 102/203 (50%)
Frame = -3
Query: 787 ERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDLT 608
+R P+R ++ + + G+ + G++ G ++KGD ++V P K+ +V + +D+
Sbjct: 333 KRDFNGPVRCTVAEKYSEMGT--VIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVE 390
Query: 607 NNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPV 428
AGD + L G++ + G+I+ P F+A ++V + I G+
Sbjct: 391 TERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 427 LVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVK 248
++H QS VE + + A + K TGE KK+ + + + ++ +E+ P +E +K+
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYP 508
Query: 247 ELGRVMLRVAGVTIAAGLVTDII 179
LGR LR G TIA G V ++
Sbjct: 509 YLGRFTLRDEGKTIAIGKVLKVV 531
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Frame = -3
Query: 769 PLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKE----MAEVRSLSINDLTNN 602
P I+D++ G G SG + G ++ D +L+ PT ++S+
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432
Query: 601 VAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLV 422
+ G + L + ++V G +L DP + + FEA I+V + I + ++
Sbjct: 433 IVKCGQSASFALKKIPKKDVRQGMVLVDPKVKPVASMVFEAEILVLHHPTTIKPNYQAML 492
Query: 421 HYQSLVESANIVKLKALLSKSTGE 350
H S+ ++A +V + S STG+
Sbjct: 493 HIGSVRQTATLVSMGR--SASTGD 514
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Frame = -3
Query: 793 VPERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKV-LVCPTKEMAEVRSLSIN 617
+PER V + + V+ G G ++G++ G+LK+GDK+ +V TK+ V+S+ I+
Sbjct: 243 IPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSV-IS 301
Query: 616 DL-----TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVV 467
L T + A GDQ+ + L G+ ++V G +L + VT + +A++ V
Sbjct: 302 GLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYV 356
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Frame = -3
Query: 793 VPERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKV-LVCPTKEMAEVRSLSIN 617
+PER V + + V+ G G ++G++ G+LK+GDK+ +V TK+ V+S+ I+
Sbjct: 244 IPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSV-IS 302
Query: 616 DL-----TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVV 467
L T + A GDQ+ + L G+ ++V G +L + VT + +A++ V
Sbjct: 303 GLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYV 357
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Frame = -3
Query: 769 PLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKE----MAEVRSLSINDLTNN 602
P I+D++ G G SG + G ++ D +L+ PT ++S+ +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431
Query: 601 VAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLV 422
+ G + L + ++V G +L DP + + FEA I+V + I + ++
Sbjct: 432 IVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMVFEAEILVLHHPTTIKPNYQAML 491
Query: 421 HYQSLVESANIVKL 380
H S+ ++A +V +
Sbjct: 492 HIGSVRQTATLVSM 505
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Frame = -3
Query: 793 VPERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKV-LVCPTKEMAEVRSLSIN 617
+PER V + + V+ G G ++G++ G+LK+GDK+ +V TK+ V+S+ I+
Sbjct: 244 IPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSV-IS 302
Query: 616 DL-----TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVV 467
L T + A GDQ+ + L G+ ++V G +L + VT + +A++ V
Sbjct: 303 GLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYV 357
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.077
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -3
Query: 733 TGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNV--AFAGDQVTLTLSG 560
TG G + G + GVLKKGDKV + + + + I +V AGD + G
Sbjct: 251 TGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRG 310
Query: 559 VDMQNVSVGYILSDPIEQVSVTTRFEARIVVFN 461
V V G P V++T R + + + +
Sbjct: 311 VKGDTVKRGMWAGHP-GAVTITNRVKVELYLLS 342
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.077
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -3
Query: 733 TGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNV--AFAGDQVTLTLSG 560
TG G + G + GVLKKGDKV + + + + I +V AGD + G
Sbjct: 251 TGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRG 310
Query: 559 VDMQNVSVGYILSDPIEQVSVTTRFEARIVVFN 461
V V G P V++T R + + + +
Sbjct: 311 VKGDTVKRGMWAGHP-GAVTITNRVKVELYLLS 342
>Z83244-7|CAB05829.1| 318|Caenorhabditis elegans Hypothetical
protein W06F12.3 protein.
Length = 318
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -3
Query: 424 VHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKE 245
VHY + N + ++ L S T +K RC + A V I+ C+E K + E
Sbjct: 97 VHYSGEIGGYNFIVMQLLGSNITDLRKFQKGRCFSAETTARVGIQ-----CLEGLKQIHE 151
Query: 244 LGRVMLRVAGVTIAAGL 194
LG + + I G+
Sbjct: 152 LGYIHRDIKPSNICVGI 168
>Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical
protein K07A12.1 protein.
Length = 581
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 364 KSTGELIKKKPRCLGNNSVAVVEIETSRPICIE----RYKDVKELGRVMLRVAGVTIAAG 197
++TG ++K KPR + + +ET + CI R+ + E M +A + G
Sbjct: 99 RATGRIVKNKPRWFPDRDYGLSMVETKKEGCISWFTLRHNNAYEQRERMFWMAEKRMNVG 158
Query: 196 LVTDIIS 176
+V +I S
Sbjct: 159 VVQEIFS 165
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 27.9 bits (59), Expect = 8.9
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
Frame = -3
Query: 667 LVCPTKEMAEVRSLSINDLTNNVAFAGDQVTLT--LSGVDMQNVSVGYILSDPIEQVSVT 494
LV +K +E + N N A A +Q L +G S G+ P E T
Sbjct: 166 LVKISKICSEKLPKTANSTENQDAPATEQTMLNNRAAGSSPSRKSPGFA-EKPSEFAKST 224
Query: 493 TRFEARIVVFNV---KVPITKGFP--VLVHYQSLVESANIVKLKALLSKSTGELIKKKPR 329
+ + + + K+P T + + ++ LVE + I LKA + + + ++K PR
Sbjct: 225 PKIRKLVEISKICSEKLPETANSTEKIALDFKKLVEISKIA-LKAEIPEPERKRLRKSPR 283
Query: 328 CLGNNSVAVVEIETSRPICIERYKDVKE 245
G+ + ++ E K+ KE
Sbjct: 284 LAGSTKIPLIRPEKQSETAKSTPKNFKE 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,259
Number of Sequences: 27780
Number of extensions: 293499
Number of successful extensions: 777
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -