Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H12
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   101   1e-23
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    93   2e-21
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    57   2e-10
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    39   5e-05
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   10.0 

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  101 bits (241), Expect = 1e-23
 Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 1/204 (0%)
 Frame = -3

Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
           P RP  K LR+ + DV+K  G G    GR+  G+LK G  V   P     EV+S+ ++  
Sbjct: 238 PSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHE 297

Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQ-VSVTTRFEARIVVFNVKVPITKGF 434
               A  GD V   +  + ++ +  GY+  D   Q       F A+++V N    I+ G+
Sbjct: 298 ALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGY 357

Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
             ++   +   +    ++K    + TG+  ++ P+ + +   A+V ++ ++P+C+E +++
Sbjct: 358 TPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQE 417

Query: 253 VKELGRVMLRVAGVTIAAGLVTDI 182
              LGR  +R    T+A G++  +
Sbjct: 418 FPPLGRFAVRDMRQTVAVGVIKSV 441


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 93.5 bits (222), Expect = 2e-21
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
 Frame = -3

Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
           P RP  K LR+ + DV+K  G G    GR+  GVLK G  V   P     EV+S+ ++  
Sbjct: 238 PTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHE 297

Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQ-VSVTTRFEARIVVFNVKVPITKGF 434
               A  GD V   +  V ++ +  GY+  D           F A+++V N    I+ G+
Sbjct: 298 ALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGY 357

Query: 433 PVLVHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKD 254
             ++   +   +     +K    +  G+  ++ P+ + +   A+V +  S+P+C E +++
Sbjct: 358 TPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQE 417

Query: 253 VKELGRVMLRVAGVTIAAGLV 191
              LGR  +R    T+A G++
Sbjct: 418 FPPLGRFAVRDMRQTVAVGVI 438


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 57.2 bits (132), Expect = 2e-10
 Identities = 31/91 (34%), Positives = 44/91 (48%)
 Frame = -3

Query: 790 PERPVXKPLRISINDVFKGTGSGFCVSGRIXXGVLKKGDKVLVCPTKEMAEVRSLSINDL 611
           P RP  K LR+ + DV+K  G G    GR+  GVLK G  V   P     EV+S+ ++  
Sbjct: 181 PTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHE 240

Query: 610 TNNVAFAGDQVTLTLSGVDMQNVSVGYILSD 518
               A  GD V   +  V ++ +  GY+  D
Sbjct: 241 ALQEAVPGDNVGFNVKNVSVKELRRGYVAGD 271


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 20/107 (18%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = -3

Query: 598 AFAGDQVTLTLSGVDMQNVSVGYILSDPIEQ-VSVTTRFEARIVVFNVKVPITKGFPVLV 422
           A  GD V   +  + ++ +  GY+  D   Q       F A+++V N    I+ G+  ++
Sbjct: 13  ALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVL 72

Query: 421 HYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSR 281
              +   +    ++K    + TG+  ++ P+ + +   A+V ++ ++
Sbjct: 73  DCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 653 CWTNQYFIALL 685
           CWTN Y+I +L
Sbjct: 109 CWTNIYYIIIL 119


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 653 CWTNQYFIALL 685
           CWTN Y+I +L
Sbjct: 162 CWTNIYYIIIL 172


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -2

Query: 596 ICWRPSHIDFVWGGHAECVSW 534
           ICW P  +  +W G      W
Sbjct: 346 ICWLPFFVVNLWSGFCSQCIW 366


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 460 VKVPITKGFPVLVHYQSLVESANIVKLK 377
           ++ P  +G PVLV +   V   N + ++
Sbjct: 1   IRPPSKQGLPVLVDFNIFVADINSINVE 28


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 653 CWTNQYFIALL 685
           CW N Y+I +L
Sbjct: 71  CWMNVYYIVIL 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,984
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)