Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H06
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 112 MGSIKELLFKFVRSFIICSISI 177
           MG IK LLF F   F +C + I
Sbjct: 5   MGMIKYLLFIFNFVFAVCGLGI 26


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 202 EEMSSSSDSFTRIAVN 249
           EE ++ +DSFTRIA N
Sbjct: 568 EESNNMTDSFTRIANN 583


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +1

Query: 97  SILFFMG----SIKELLFK-FVRSFIICSISIFLECFCKQ 201
           S+LF++G    +I   ++  F + F     SI  +CFCK+
Sbjct: 45  SVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKR 84


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +1

Query: 97  SILFFMG----SIKELLFK-FVRSFIICSISIFLECFCKQ 201
           S+LF++G    +I   ++  F + F     SI  +CFCK+
Sbjct: 493 SVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKR 532


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 51  HKFSXTTTARIKIFEINTFLHGID*RIIVQVCEEFH-YLLDFNILGVFL 194
           HKFS  T  R K  + +  +H I   I  Q+  EF  Y +D  I  +++
Sbjct: 91  HKFSSVTLYRNKTVKYSARMHAI---IACQM--EFQLYPMDIQICPIYI 134


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 488 MKKLQERFLKIMSDVADLSDEKHRLEHIILQLQNET 381
           +K L+ER  K       LS E+  L   + QL N+T
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQT 132


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 428 HQINRQHHSLFLKNVPVVSSLHRPLRLK 511
           H++ +    +FLK +P +  + RP + +
Sbjct: 328 HRMPQLIRKIFLKYLPTILMMRRPKKTR 355


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 216 IFRQFYEDSSQFFQLSFKFTTFRFKH 293
           I RQFY D +  + L   + T  F++
Sbjct: 224 IARQFYNDDANVYILPDPYNTKFFRY 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,237
Number of Sequences: 438
Number of extensions: 3124
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)