Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H04
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar...    62   6e-11
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   3.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   4.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   4.5  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   7.8  

>SPAC1296.02 |cox4||cytochrome c oxidase subunit
           IV|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
 Frame = -2

Query: 515 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 339
           G  D  +P  LE ATGLER ELL+  +G  D F+MK +  S  GT  +P +V S    R 
Sbjct: 59  GGRDGEVPTDLEQATGLERYELLSELSGR-DAFDMKPLDASRKGTLTDPIMVTSLDPYRH 117

Query: 338 VGCICEEHAT-AITWLWLHKDQPRRC-ECGHWYKL 240
           +GC      +  + W+ ++KD+ RRC ECG  YKL
Sbjct: 118 IGCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKL 152


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +2

Query: 335 QQYEHQSRKVPELGFHGFLL-TSSLPSC*RGHHCRPEGP-----GVPSFPSQWHVPRDQA 496
           QQ +HQ +K P+ G    +  T+S P+    H  + +GP      +PS P     P   A
Sbjct: 270 QQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIPSSPKTEGAP-SNA 328

Query: 497 SFCRHIPA 520
            F   +PA
Sbjct: 329 QFRPSLPA 336


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 261 LATA-RLVLV*PKPGDGCSVFFTNASNNT 344
           LA A  LV+V  +PG GCS F  + +++T
Sbjct: 183 LANAGELVMVLGQPGSGCSTFLRSVTSDT 211


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 651  STYLIRLTIGNLNELSVKIEHN 586
            S  LIRLT   LNE + K+ HN
Sbjct: 2746 SVQLIRLTYSELNERANKLAHN 2767


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 358 EGTRVGFSRVPADFFTTFMLKGSSLPA*RARSSFLSKPVACSKGSGI 498
           +GT + FS +P   FT    K +S     A +SFLS   ACSK S +
Sbjct: 591 DGTYL-FSYIPERLFTEKKPKNASKEI--AVTSFLSSHAACSKLSNV 634


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 425 HHCRPEGPGVPSFPSQWHVPRDQASFCRHIPA 520
           HH   + P  P+   Q HVP        H+P+
Sbjct: 309 HHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPS 340


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = +2

Query: 164 MRFVSAVTLLDNKLKELLFKGVASQSICTNVHTRNGAVGPCVTKAR*WL*RVLHKCIQQY 343
           ++ + A+  + N+   + F  VA  +    V  + G++ P VT     +  V+ +C+++ 
Sbjct: 532 LKMIQAIAAIPNEQYHIHFPEVALPA--NAVQEKEGSL-PGVTVGPDLM-DVMKRCLERD 587

Query: 344 EHQSRKVPELGFHGFLLTSSLPS 412
           + +   +PEL  H FL  + LPS
Sbjct: 588 QRKRLTIPELLVHPFL--NPLPS 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,902
Number of Sequences: 5004
Number of extensions: 64576
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)