Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H02
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.70 
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    27   1.2  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   2.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   8.7  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = -1

Query: 254 QTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTNLSA 75
           Q   +   +R+      +N+K+ + + P    E   I+P  ++RY++  E    L  +  
Sbjct: 179 QDDNRVSDIRQMENRRELNVKRRSVSSPA---EDLAIRPLSFSRYKKAEEIPESLPPIKG 235

Query: 74  NDVLSAIKQL 45
            D  S++++L
Sbjct: 236 RDSFSSVREL 245


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 227 REFIKNNYVNIKKENPNFPIL 165
           + F+ +NYV + +E+PNF IL
Sbjct: 21  KSFLHSNYVQLIQESPNFLIL 41


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 271 NSFSAPPRRSAIFTNY 318
           N+FSAPPRRS  +  Y
Sbjct: 140 NAFSAPPRRSRGYNTY 155


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 212 NNYVNIKKENPNFPILIRECSG 147
           N  ++I K NP FPI+++   G
Sbjct: 704 NAVISIAKANPTFPIVLQWTGG 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,416
Number of Sequences: 5004
Number of extensions: 30895
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)