Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H02
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical...   107   3e-24
Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical pr...    44   4e-05
Z82286-3|CAB05309.1|  781|Caenorhabditis elegans Hypothetical pr...    31   0.47 
U80837-4|AAB37905.1|  504|Caenorhabditis elegans Hypothetical pr...    30   0.82 
Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC006629-2|AAK18928.1|  306|Caenorhabditis elegans Hypothetical ...    28   3.3  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    27   4.4  
Z35719-3|CAA84797.1|  347|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical
           protein Y63D3A.7 protein.
          Length = 92

 Score =  107 bits (258), Expect = 3e-24
 Identities = 54/88 (61%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
 Frame = -1

Query: 305 MALRLGG-ALKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVW 129
           M++RL G AL+E+RIH+CQ S  S GVR FI+N+YV IKK NP FPILIRE SGI PRV+
Sbjct: 1   MSVRLAGTALREIRIHVCQKSPASAGVRAFIENDYVGIKKANPQFPILIREASGIVPRVF 60

Query: 128 ARYERGAEKSTPLTNLSANDVLSAIKQL 45
           ARYE G E+   L +LS  +V S I QL
Sbjct: 61  ARYEHGVERVATLEDLSRENVKSTITQL 88


>Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical
           protein C25A1.13 protein.
          Length = 189

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -1

Query: 296 RLGGALKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYE 117
           R    L  + +  C+ S+ S GVR FI+N  V I ++NP+  I  +      P + A Y 
Sbjct: 40  RYTNQLHRITVRFCKQSESSVGVRNFIENQLVEIGRKNPSVVIYAQPVRNSNPSIRAEYG 99

Query: 116 RGAEKSTPLTNLSANDV 66
            G        N++ ++V
Sbjct: 100 NGRTLQINAKNMTQDEV 116


>Z82286-3|CAB05309.1|  781|Caenorhabditis elegans Hypothetical
           protein W02A2.6 protein.
          Length = 781

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 236 EGVREFIKNNYVNIKKENPNFPILIRECS 150
           EG+   +KN  V  K+E+P FPIL+R  S
Sbjct: 749 EGLLLSLKNMKVEAKQEDPYFPILVRHIS 777


>U80837-4|AAB37905.1|  504|Caenorhabditis elegans Hypothetical
           protein F07E5.6 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 197 IKKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTN 84
           ++K++P+ P L+  CS + PR  A +  G+ +   + N
Sbjct: 459 VQKQSPSLPALVSPCSSLSPRAHAHFS-GSHRLVMILN 495


>Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical
           protein F53F4.7 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 168 YRKIGVFLLNIDVVVFDKFPHSLRLFAGLT*MYTQFF 278
           Y K+G FL  I V     F H   ++ GLT +Y QFF
Sbjct: 329 YLKLGEFLNQIPV-----FGHYSSIYGGLTSLYLQFF 360


>AC006629-2|AAK18928.1|  306|Caenorhabditis elegans Hypothetical
           protein F12E12.4 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 308 KMALRLGGALKELRIHLCQTSKQSEGVREFIKNN 207
           K+ L +   L++L IH C T K  + VR  I  N
Sbjct: 254 KLELAIRYKLEKLEIHCCNTIKTIQDVRSIIAGN 287


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 278 KELRIHLCQTSKQSEGVREFIKNNYVNIKKENPN 177
           K L +HL   S QSEG  E I+NN  + K  +P+
Sbjct: 508 KSLHLHL--KSHQSEGAGEQIQNNSFSTKTASPH 539


>Z35719-3|CAA84797.1|  347|Caenorhabditis elegans Hypothetical
           protein F17C8.5 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 342 SALDSFNNIIFISWLRFSTLG 404
           S +D F   IF SW  +ST+G
Sbjct: 104 SRIDGFGKAIFFSWTLYSTVG 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,160,756
Number of Sequences: 27780
Number of extensions: 168698
Number of successful extensions: 420
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)