Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H02
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 SFSAPPRRSAIFTNYEFF 327
           S + P   SA+FTNY+ +
Sbjct: 553 SMTIPGSNSAVFTNYKLY 570


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 221 FIKNNYVNIKKEN 183
           FI NNY+N+ + N
Sbjct: 623 FINNNYINLVRPN 635


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 131 WARYERGAEKSTP 93
           W +Y  GAE +TP
Sbjct: 28  WTKYPFGAEANTP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,652
Number of Sequences: 438
Number of extensions: 2027
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)