Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_H01
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   157   8e-40
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.37 
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   3.5  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        25   8.0  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  157 bits (381), Expect = 8e-40
 Identities = 72/122 (59%), Positives = 99/122 (81%)
 Frame = -3

Query: 421 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFNVKSMPIRKDDEVQVVRG 242
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKE R+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 241 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 62
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 61  RR 56
           R+
Sbjct: 120 RK 121


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 134 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 283
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 252 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 166
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 407 LVELHSVALRQNDTAKNRNRKKKQ 478
           LVE  S  +  N  AKN+ +KKKQ
Sbjct: 82  LVEGESPIVSTNKKAKNKKKKKKQ 105


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = -2

Query: 446  CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 327
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 26/100 (26%), Positives = 42/100 (42%)
 Frame = -3

Query: 442 VLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFNVKSMPIRKDD 263
           V A ++  K +   TSS  ++       P H+ R L SSP S++     +  S    K  
Sbjct: 231 VSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290

Query: 262 EVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGA 143
             +  +       + K  ++ RK       RI +EKA+GA
Sbjct: 291 PSKSEKTSSMSVSI-KPPKIIRKGSKEQ-NRIAKEKASGA 328


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 433 KSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFN 293
           K+D  K    V S R+K    HF+  + + R+   S  S+   ++FN
Sbjct: 264 KADLAKLFNLVESQRQKMDSLHFALTNALERLNDISSTSQFPSERFN 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,109
Number of Sequences: 5004
Number of extensions: 39783
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)