Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_H01
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 186 8e-48
12_01_0323 - 2459854-2460306 185 2e-47
11_01_0317 - 2365493-2365786,2365825-2365953 147 4e-36
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 29 1.5
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579 29 1.5
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 6.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 8.0
>01_01_0263 + 2136858-2137331
Length = 157
Score = 186 bits (453), Expect = 8e-48
Identities = 89/132 (67%), Positives = 111/132 (84%)
Frame = -3
Query: 421 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFNVKSMPIRKDDEVQVVRG 242
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS E R K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 241 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 62
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 61 RRAKGRLAALGK 26
R+A+GR A K
Sbjct: 120 RKARGRAADKAK 131
>12_01_0323 - 2459854-2460306
Length = 150
Score = 185 bits (450), Expect = 2e-47
Identities = 89/132 (67%), Positives = 110/132 (83%)
Frame = -3
Query: 421 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFNVKSMPIRKDDEVQVVRG 242
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS E R K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 241 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 62
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 61 RRAKGRLAALGK 26
R+A GR A K
Sbjct: 120 RKASGRAADKAK 131
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 147 bits (357), Expect = 4e-36
Identities = 78/132 (59%), Positives = 97/132 (73%)
Frame = -3
Query: 421 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFNVKSMPIRKDDEVQVVRG 242
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS E R K+NV VRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47
Query: 241 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 62
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 106
Query: 61 RRAKGRLAALGK 26
R+A GR A K
Sbjct: 107 RKASGRAADKAK 118
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = -3
Query: 418 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKEXRQKFNVKSMPI------RKDDEV 257
+F + ++S++ ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 256 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 173
QV+ G KG +VG+V ++++ V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128
>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
Length = 339
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/87 (31%), Positives = 41/87 (47%)
Frame = +2
Query: 17 PLIFAKCSQSALCSAIEDCFAVFIHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLF 196
PL F K +Q + A + LQL TL R + + T+ F + LN + LF
Sbjct: 50 PLAFLKLTQQQ--PQQQQKIAAVVSLQLWTATLLRDASWVKILTVAYFFGSFLN--HNLF 105
Query: 197 TIHLHHFANLLAFVVSTYNLNFIVFAN 277
+ +H ++ LAF +YN +FAN
Sbjct: 106 -LAIHELSHNLAFTTPSYNRWLGIFAN 131
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 313 EXRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 167
E KF + P K D +Q+V + + QQ + V K+F +YI +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 8.0
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -3
Query: 322 LSKEXRQKFNVKS-MPIRKDDEVQVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKA 152
L+ E ++ N KS +P K+D V GH + + V +VMQ + + IE +Q E++
Sbjct: 3846 LNDEVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEES 3902
Query: 151 NGATAYVGIHPSKCVIVK 98
NG + S C+IV+
Sbjct: 3903 NGVKSTGDYLESGCIIVE 3920
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,741
Number of Sequences: 37544
Number of extensions: 252337
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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