Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_G21
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0992 + 13049871-13050449 30 1.2
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 25 1.8
09_04_0652 - 19227686-19227926,19229368-19232294 29 2.7
02_02_0240 + 8196140-8198248,8198381-8198650 28 4.7
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 4.7
11_06_0146 + 20621730-20621865,20621947-20622026,20622600-206226... 27 8.2
10_01_0226 - 2401252-2401277,2403491-2403537,2404381-2405504 27 8.2
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 27 8.2
>03_02_0992 + 13049871-13050449
Length = 192
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 378 CNLCHHQQADRRPLLNISLPPPPRLPTI 461
C LCH + R SLPPPP P +
Sbjct: 38 CRLCHRSPSSGRIYKGRSLPPPPPSPLL 65
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 25.0 bits (52), Expect(2) = 1.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 396 QQADRRPLLNISLPPPPRLPTI 461
Q + P + ++LPPPP PT+
Sbjct: 755 QHSAYNPEMTLNLPPPPPPPTL 776
Score = 22.6 bits (46), Expect(2) = 1.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 435 PPPPRLPTIKXILS 476
PPPP LP ILS
Sbjct: 771 PPPPTLPPSSAILS 784
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 387 CHHQQADRRPLLNISLPPPPRLPTIKXILSP 479
C H L++SLP P R P K + SP
Sbjct: 359 CTHSSVKHDQFLDLSLPVPSRRPPAKSVSSP 389
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 27.9 bits (59), Expect = 4.7
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 429 SLPPPPRLPTIKXILSPL 482
S+PPPP +PT+ +++P+
Sbjct: 638 SMPPPPHMPTMATMVNPI 655
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 4.7
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 207 IKYLSN*KIEPFEISLSNVXNHTLNRKINLNKYQTVFLHFS-INLNIFIYLFKTSN*YCN 383
++ L N E F + LSN + N +K T ++H + I L + +L +
Sbjct: 1910 LRALQNGDSEEFHVKLSNSKMDLVLALSNASKESTKYIHSTVIKLQMLDHLTMAWDLRWK 1969
Query: 384 LCHHQQADRRPLLNISLPPPPRLPTIKXILSPLELI 491
C + Q + + N P P +PT + +S LEL+
Sbjct: 1970 FCLN-QTSKSYVGNKDFSPVPTVPT-RMQISDLELL 2003
>11_06_0146 +
20621730-20621865,20621947-20622026,20622600-20622686,
20622789-20622866,20622947-20623038,20623132-20623333,
20623644-20623734,20624163-20624221,20624413-20624561,
20624662-20624743,20624828-20625214
Length = 480
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 429 SLPPPPRLPTIKXIL 473
SLPPPPR PT+ +L
Sbjct: 10 SLPPPPRRPTVVLLL 24
>10_01_0226 - 2401252-2401277,2403491-2403537,2404381-2405504
Length = 398
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 414 PLLNISLPPPPRLP 455
PL N LPPPP+LP
Sbjct: 341 PLRNARLPPPPQLP 354
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 399 QADRRPLLNISLPPPPRLPT 458
+A RPLL++SL PPP P+
Sbjct: 37 EARLRPLLSLSLSPPPTPPS 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,443
Number of Sequences: 37544
Number of extensions: 158217
Number of successful extensions: 480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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