Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G20
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    69   3e-13
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   1.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   2.5  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   3.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.3  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   7.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 34/49 (69%), Positives = 37/49 (75%)
 Frame = -2

Query: 465 ISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGXRIACGVIGLA 319
           ISL G NSIIGRT+V+HA  DDLG G  E S  TGNAG R ACGVIG+A
Sbjct: 105 ISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -1

Query: 355 WXPYC-----LWSHWLG*DLNTFIFHMLGLVLQ 272
           W PY      +WS W+  +L T  FHM  + LQ
Sbjct: 414 WVPYLEYVRFMWSPWIIDNLGTVSFHMYVIYLQ 446


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 278 YQAQHMKNESI*ILAKPMTPQAI 346
           Y     +NES  +LAKPMTP  +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 77  ILHNFRNAIKKNFITSYRLTTTTD 148
           + HNFRN + +N + S  LT   D
Sbjct: 323 VFHNFRNGVCRNLVCSDLLTRGID 346


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 35   INACTKDNVKPKIA-ILHNFRNAIKKNFITSY-RLTTTTDYAYIFSLSDRLILPSKTL 202
            ++  T D V+ K+   L N+++ I K  ++      T  ++  +FSL +RL LP+  L
Sbjct: 928  LSELTDDVVQKKVLESLDNYKSGIWKLVLSGLPNCKTVFEHLLLFSLEERLDLPAAFL 985


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 71  IAILHNFRNAIK-KNFITSYRLTTTTDY 151
           +A++H F NAIK K+F  S  L T  +Y
Sbjct: 642 LAVMHQFVNAIKAKSFEFSTFLYTVIEY 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,983
Number of Sequences: 5004
Number of extensions: 28967
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)