Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G16
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    50   4e-07
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    32   0.10 
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    28   1.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.1  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   6.7  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.7  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 662 LDDRIRMVYTEAVILETLRISTVASMGIPHMALNDAKLG-NYIIPKGTFILLSLY-ELHH 489
           LD   +M YT AV+ E LR+     M +P+       +  +Y +PK   ++ +LY  LH 
Sbjct: 363 LDLMEKMTYTRAVVKECLRLRPPVLM-VPYRVKKAFPITPDYTVPKDAMVIPTLYGALHD 421

Query: 488 GPHWKDPETFRPERFLTKEGNILQD--EWLIPFGIGKRRCIGEGLARSEL 345
              + +PETF P+R+    G   Q    W++ FG G   C+G+  A + L
Sbjct: 422 SKVYPEPETFNPDRW-APNGLAEQSPKNWMV-FGNGPHVCLGQRYAVNHL 469


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 404 IPFGIGKRRCIGEGLARSELFMFLTHILQKF 312
           +PFG G+ RCIGE  A    +M L+ I+ KF
Sbjct: 433 LPFGAGRHRCIGEQFA----YMHLSTIISKF 459


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 289 SFLGILRWNF*RI*VRNMKSSERANPSPIQRRFPIPKGMSHSSCKMLPSLVRNRSGRNVS 468
           S   ILRW+F ++  +N  SS  +N SP   ++ I K +   +C     LV N + R  S
Sbjct: 124 SIFSILRWSFQKLGFQNQASSILSNRSP-SGQYVIRKNIEKLAC-----LVHNEAMRRCS 177


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 337 NMKSSERANPSPIQRRFPIPKGMSHSSCKMLPSLVRN 447
           N  + E+ N  P+Q   P+P  MS +S  +  S + N
Sbjct: 41  NRLAVEKPNIQPLQGHSPVPSFMSTASTNISSSKINN 77


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 585 HRCDSRYPQSFKNYRFCVHHSYSVVKQMITIATDYVIY 698
           H C + Y    ++  + +HH+ S     +T   DYVI+
Sbjct: 368 HSCPTLYHDDAEDIYYDLHHTESYSNINLTKTPDYVIH 405


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 MDFHCPLSNSGLFSNREKH 206
           M FH P+SNSG  + R  H
Sbjct: 200 MQFHLPISNSGAATPRSVH 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,397
Number of Sequences: 5004
Number of extensions: 67050
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)