Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G11
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   142   3e-35
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   1.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   4.8  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   6.3  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   6.3  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  142 bits (343), Expect = 3e-35
 Identities = 70/128 (54%), Positives = 89/128 (69%)
 Frame = -2

Query: 400 DDDVDLFGXXXXXXXXXXXXXXXERLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 221
           +D++DLFG                R+A YN KKA KP  + KS + LDVKPWDDET M  
Sbjct: 88  EDEIDLFGSDEEEDPEAERIKAE-RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDE 146

Query: 220 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSV 41
           LE+AVRSI  DGL+WG +KLVP+ +G++K QI+ VVEDDKVS++ L EE+E  EDYVQS 
Sbjct: 147 LEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQST 206

Query: 40  DIAAFNKV 17
           DIAA +K+
Sbjct: 207 DIAAMSKL 214


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 251 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 355
           LY+Q +       W+F    + C+ +LF   +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 8    SVLDFVERSNIDTLYIVFIFLDFLSKPINRNLIIFNNTGNLQLMDTISQR 157
            SVLD +   N  T  I+F     + KP+N +LI+ N TG L  +  +  R
Sbjct: 970  SVLDDIVDFNHLTWSILFGENYIILKPLNTDLIV-NKTGKLVALRPLVNR 1018


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
 Frame = +2

Query: 206 YSLFQGCHISLIIPWLYIQNN----------IRLCN*HW-LFSFLCIICS-KTLFLYLSC 349
           Y  F   + S+ IPW  IQN+          I L    W +F+FL ++C+ ++   + S 
Sbjct: 158 YGCFWLSYASIFIPWFNIQNSYDDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSL 217

Query: 350 FSTL 361
           F +L
Sbjct: 218 FMSL 221


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
            homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 94   IDWLTEEIEKNEDYVQSV 41
            I+WL EE ++ E+Y+Q++
Sbjct: 980  IEWLLEEGKRAEEYIQNL 997


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,521
Number of Sequences: 5004
Number of extensions: 27068
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)