Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_G11
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical p... 149 1e-36
L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical pr... 146 4e-36
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 31 0.33
Z78018-8|CAB01450.2| 405|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z78014-3|CAB01430.2| 405|Caenorhabditis elegans Hypothetical pr... 27 5.5
AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical ... 27 7.2
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 7.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 7.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 7.2
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 7.2
Z66514-2|CAA91342.1| 229|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z38112-3|CAA86230.2| 333|Caenorhabditis elegans Hypothetical pr... 26 9.5
>Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical
protein Y41E3.10a protein.
Length = 263
Score = 149 bits (360), Expect = 1e-36
Identities = 77/129 (59%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Frame = -2
Query: 400 DDDVDLFGXXXXXXXXXXXXXXXERLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAA 221
DDD DLFG ERLAAY AKKA K IAKS++ILDVKPWDDETD+
Sbjct: 135 DDDFDLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGE 194
Query: 220 LEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKN-EDYVQS 44
+E+ VRSI DGL+WG AKL+P+ YGI KLQI V+ED KVS+D L E+I + ED+VQS
Sbjct: 195 MEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQS 254
Query: 43 VDIAAFNKV 17
VDI AFNK+
Sbjct: 255 VDIVAFNKI 263
>L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical
protein F54H12.6 protein.
Length = 213
Score = 146 bits (355), Expect = 4e-36
Identities = 76/128 (59%), Positives = 90/128 (70%), Gaps = 1/128 (0%)
Frame = -2
Query: 397 DDVDLFGXXXXXXXXXXXXXXXERLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAAL 218
DD DLFG ERLAAY KKAKK IAKS++ILDVKPWDDETD+ +
Sbjct: 86 DDFDLFGSDDEEEDAEKAKIVEERLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEM 145
Query: 217 EQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKN-EDYVQSV 41
E+ VRSI DGL+WG AKL+P+ YGI KLQI V+ED KVS+D L E+I + ED+VQSV
Sbjct: 146 EKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSV 205
Query: 40 DIAAFNKV 17
DI AFNK+
Sbjct: 206 DIVAFNKI 213
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 31.1 bits (67), Expect = 0.33
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 175 GAAKLVPLAYG-IHKLQISCVVE-DDKVSIDWLTEEIEKNEDY 53
G K P A G I + +SC+ E DD V +WL E IE+ EDY
Sbjct: 288 GLKKYAPGALGPILETLLSCMTEMDDDVLNEWLNE-IEEEEDY 329
>Z78018-8|CAB01450.2| 405|Caenorhabditis elegans Hypothetical
protein W07G4.6 protein.
Length = 405
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 217 EQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDW 86
++++RS+ G+L G ++ L I K+ + +ED SI W
Sbjct: 52 KESIRSVK--GILTGGVAVIILIISIIKIIVLMQIEDKSFSIGW 93
>Z78014-3|CAB01430.2| 405|Caenorhabditis elegans Hypothetical
protein W07G4.6 protein.
Length = 405
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 217 EQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDW 86
++++RS+ G+L G ++ L I K+ + +ED SI W
Sbjct: 52 KESIRSVK--GILTGGVAVIILIISIIKIIVLMQIEDKSFSIGW 93
>AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical
protein Y57A10C.11 protein.
Length = 262
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +2
Query: 257 IQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 355
I +++L + +++ + +CS+T ++ LSC +
Sbjct: 145 IPKSVKLTSLQMIYTIIFFVCSQTYYISLSCMT 177
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 178 WGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDY 53
WGA +P + + K C D VS+ W E++ DY
Sbjct: 3648 WGAYATLPPGWFVVKNLKQCDKTDFAVSMSWEPVELDMASDY 3689
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 178 WGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDY 53
WGA +P + + K C D VS+ W E++ DY
Sbjct: 3648 WGAYATLPPGWFVVKNLKQCDKTDFAVSMSWEPVELDMASDY 3689
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 178 WGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDY 53
WGA +P + + K C D VS+ W E++ DY
Sbjct: 3648 WGAYATLPPGWFVVKNLKQCDKTDFAVSMSWEPVELDMASDY 3689
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 178 WGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDY 53
WGA +P + + K C D VS+ W E++ DY
Sbjct: 3648 WGAYATLPPGWFVVKNLKQCDKTDFAVSMSWEPVELDMASDY 3689
>Z66514-2|CAA91342.1| 229|Caenorhabditis elegans Hypothetical
protein K01A11.2 protein.
Length = 229
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 277 KSNIILDVKPWDDETDMAALEQAVRS-ISTDGLLWGAAKLVPLAYG 143
K + IL + +E D AL AV + I DG+ W AAK G
Sbjct: 146 KFDFILSSETIYNEDDYQALHDAVAATIKDDGVAWFAAKFFYFGVG 191
>Z38112-3|CAA86230.2| 333|Caenorhabditis elegans Hypothetical
protein E03A3.5 protein.
Length = 333
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 2 NISVLDFVERSNIDTLYIVFIFLDFLSKPINR---NLII 109
N+++ DF+ + D L I F ++KP++R NL++
Sbjct: 258 NVTITDFLTQQTFDYLEIFDSFNQTITKPVSRLSGNLVV 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,114,848
Number of Sequences: 27780
Number of extensions: 153916
Number of successful extensions: 460
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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