Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G09
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical ...    90   2e-18
Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical pr...    72   5e-13

>AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical
           protein Y48G1C.12 protein.
          Length = 210

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 38/91 (41%), Positives = 58/91 (63%)
 Frame = -3

Query: 879 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDR 700
           KT V+ +  Y D+K DESYTPS+I ++ G+   D+   +     EP GW  I ++D + +
Sbjct: 73  KTDVAMMMFYLDFKNDESYTPSKIQVKMGSSHQDIFFRQTQTFNEPQGWTFIDLRDKNGK 132

Query: 699 PIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 607
           P R + +Q+ V+ NHQNGRDTH+R ++V  P
Sbjct: 133 PNRVFWLQVQVIQNHQNGRDTHIRHVRVLGP 163


>Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical
           protein F15H10.3 protein.
          Length = 201

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 32/91 (35%), Positives = 48/91 (52%)
 Frame = -3

Query: 879 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDR 700
           KT +S++ ++ DY  DESY P  + I  G   ND        + +P GW  IPI D    
Sbjct: 71  KTDISYVMLFLDYSRDESYCPQEVRIDLGDGTNDWWLKMYRRVDQPKGWVKIPIHDAFGN 130

Query: 699 PIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 607
           P+R   +Q+ ++ NH+ GRD  +R  +V  P
Sbjct: 131 PLRVMSLQMTIMKNHEKGRDCVVRHFRVLGP 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,577
Number of Sequences: 27780
Number of extensions: 377478
Number of successful extensions: 926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)