Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G06
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   2.2  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.8  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 219 SVYIMYTILLIGLNRLFFSFFSYIDVLNIVH*KPYHFHYFIVMYPRYIFVS 67
           SVY+ Y  +LI  N L      YI +  + H KP  + +F+      +F++
Sbjct: 462 SVYLSYYGVLI--NFLALCALVYISIFPVTHEKPSAYGFFVSFLGPSVFIA 510


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 468 N*LNIIIKYTTDFSFRLLVDIFKDEISFC 382
           N L I I+ T D SFR LV  F   + +C
Sbjct: 263 NTLGISIEVTKDMSFRTLVFNFLTSVYYC 291


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 323 AYK*FIQFVNLTSMVIIRQVQNDISSLKI 409
           +YK F  FVN T  V++R V ND   + +
Sbjct: 126 SYKGFEAFVNRTFAVLLRIVVNDNEEMAV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,277
Number of Sequences: 5004
Number of extensions: 43742
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)