Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G06
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-4|CAA92791.1|  520|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine re...    28   4.6  
U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine rece...    28   6.1  

>Z68493-4|CAA92791.1|  520|Caenorhabditis elegans Hypothetical
           protein C33A12.6 protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 240 LAFIDLFSVYIMYTILLIGLNRLFFS 163
           LA I LFS+YI Y IL   + ++FFS
Sbjct: 485 LAVISLFSLYISYIILRAVIRKIFFS 510


>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 298 FFLIFSLDVFLFVLCTRLEFGIYRS-F*CLHYVYN 197
           F L+ +L  FL V C  L F IYR+ F  LH  YN
Sbjct: 52  FHLLIAL--FLSVFCKTLNFAIYRAGFRLLHMCYN 84


>AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine
           receptor, class x protein67 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 226 SF*CLHYVYNFIDRLKSIIFFFFFLYRCT*YCPLKTV--PFSLFYSYVPSIYFCFMLFSI 53
           SF CL +   F+D L S IF  +F       CP+  +  P    YS++      F   S 
Sbjct: 38  SFGCLSFNQTFVDALHSTIFLLYF-------CPMVLLDQPLMKKYSFIMGCALLFCYESS 90

Query: 52  VRT*F 38
           V T F
Sbjct: 91  VLTHF 95


>U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 29 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 202 YNFIDRLKSIIFFFFFLYRCT*YCPLKTVPFSLFYSYVPSIYFCFMLFSIVR 47
           YN +  + S IF ++ LY      P+K + F  F   +PSI    + FS+ +
Sbjct: 97  YNLVWMISSYIFRYYILY--VREPPIKNLVFVAFCLSIPSIIHMAIWFSLYK 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,212,703
Number of Sequences: 27780
Number of extensions: 238818
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)