Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G03
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.17 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   2.8  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    27   4.8  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   8.4  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.4  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 382 NSLIVNFIDNLTRIFEEFHMTILSTSLIC 296
           NSL   ++D +TR +  FH+ +L   +IC
Sbjct: 204 NSLSTRWLDRITRFYATFHLIVLVVCMIC 232


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 885 IEKRSXRVQPAKGPXRMAALVT---SSTLKVPARTAPGSSRKEPGKSSVNVALVVSLR-S 718
           +  RS   +P+    R  +LV    SSTLK P+ ++ G S     K S   +  +S +  
Sbjct: 585 LSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLE 644

Query: 717 VTETSTLKLRADT 679
            +  ST KL   T
Sbjct: 645 TSRLSTKKLPGST 657


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 328 ETPRKSSLDYQ*NLLSNYSSFIHNGHSKVSFHNCFKTRKF 447
           E  + +  D+   LL NY S +H  HS+ +F    K+ KF
Sbjct: 195 ENHKLADRDFAVGLLKNYWSQLHEFHSENNFSLEMKSLKF 234


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 308  STQNSHMKLLENPR*IINKIYYQTILVLFIMVTPKSVFIIVSKRENFKNAILKTNRVKFE 487
            S  N+ MKLL+        ++ + ++VL     PKS F    +   +K+  L+ N V+  
Sbjct: 869  SAFNNFMKLLKKTNDEHQNLHKEMLVVLSSQ--PKSTFRRAVENWKYKSDYLQLNLVRLR 926

Query: 488  ALKPVHFKYK 517
                V  KYK
Sbjct: 927  VYISVLEKYK 936


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 613 LNWKRFNRIYRIRI--FLLFVVM 551
           L+W+RFNR+ R R+   L+FV++
Sbjct: 330 LDWQRFNRVIRARVGWGLVFVLI 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,950
Number of Sequences: 5004
Number of extensions: 69414
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)