Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G03
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0023 + 146841-147002,147962-148036,148181-148234,148284-14...    30   2.2  
01_01_0661 - 5036592-5037428,5037529-5037957,5038067-5038261,503...    29   5.1  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    29   6.7  

>02_01_0023 +
           146841-147002,147962-148036,148181-148234,148284-148388,
           148736-148836,148937-148992,149284-149324,149427-149527,
           149629-149724,149905-149969,150048-150119,150537-150772,
           150874-150904,151020-151165,151264-151365,151469-151513,
           151614-151780,151812-152214
          Length = 685

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 805 GPCPDGSWLVKEGTGKVKC 749
           G CP GSW+V++  G   C
Sbjct: 556 GVCPQGSWIVRQSVGSTPC 574


>01_01_0661 -
           5036592-5037428,5037529-5037957,5038067-5038261,
           5038919-5038942,5039436-5039780
          Length = 609

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 891 LVIEKRSXRVQPAKGPXRMAALVTSSTLKVPARTAPGSSRKEPGKSS 751
           + +  RS R   +     M+++ +SST+ + + ++ G +  EPG SS
Sbjct: 254 VAVYSRSKRNSDSSSVSSMSSVSSSSTISISSASSSGGASPEPGLSS 300


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -2

Query: 836 WRRLSHPQHSRSLPGRLLARQGRNRESQVSMSPWSCPSGV*RRHRPSS*ELTRIED*VCE 657
           W ++ HP  ++   G L+ +   N     S +P   PSGV   +   + +   ++D  C+
Sbjct: 220 WVKVMHPFDAKEFIGSLVRQFKANSHEGTSNTPQGTPSGVSALNEMEAKDYNLLDD-FCK 278

Query: 656 LISN 645
            ++N
Sbjct: 279 YVAN 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,443,103
Number of Sequences: 37544
Number of extensions: 442920
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)