Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G03
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    40   0.003
AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    32   0.49 
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    30   2.0  
L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...    29   3.4  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    29   4.5  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    28   7.9  
AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    28   7.9  

>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 820  ILNTQGPCPDGSWLVKEGTGKVKCQCRPGRVPPECNGDI 704
            I +T  PC +G+  + E  G+ KCQC PG   P C+ +I
Sbjct: 1788 ICSTNNPCRNGARCIGEKLGRFKCQCVPGWEGPNCDKNI 1826


>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 868 ACTARKGTXAYGGACHILNTQGPCPDGSWLVKEGTGKVKCQCRPGRVPPECNGDID 701
           +C  + GT   G  C I   +  C +G        GK+ C+C PG     C  +I+
Sbjct: 429 SCKCQNGTV--GKLCEIECPKDQCENGGQCYLNTFGKIGCKCVPGTTGRRCEREIN 482


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -3

Query: 835 GGACHILNTQ-GPCPDGSWLVKEGTGKVKCQCRPGRVPPECNGDID 701
           G  C   NT    C +G    +   G  KC+C PG     C  +ID
Sbjct: 326 GKGCEFKNTGCKTCENGGKCAEAAGGLQKCECSPGFTGERCETNID 371


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -3

Query: 898 SGSCNRKEVXACTARKGTXAYGGACHILNTQGPCPDGSWLVKEGTGKVKCQC-RPG 734
           S +C   E   C   +   A   +C        CP G+ + K+G G    QC  PG
Sbjct: 653 SKTCQTFEYNGCEGNRNNFASQKSCQNYCLSEACPPGTVVAKDGDGSRLVQCSNPG 708


>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 455 AILKTNRVKFEALKPVHFKYKKSHIVPYCGKGHNYEK*KYSNSINSIKPFPVQPNF 622
           AIL+ + V   ALKP++  Y   +++P  G+    ++  Y   + SI+ FP Q  F
Sbjct: 200 AILEFSEVN-SALKPIYDAYS-FNVIPVLGEILASDRASYQYLVESIRKFPNQDEF 253


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -3

Query: 520 LLIFKMYRLQSFKFHSVGFQ 461
           L+IFK Y++ SF+++ +GFQ
Sbjct: 32  LIIFKSYKVDSFQYYLLGFQ 51


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 799 CPDGSWLVKEGTGKVKCQCRPGRVPPECNGDID 701
           C +    V E  G VKC C PG V   C  D D
Sbjct: 134 CQNNGTCVAEN-GNVKCACPPGFVGDHCETDED 165


>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 562 FVVMPFSTIGHNM*LLIFKMYRLQSFKFHSVGFQ 461
           F+ + F+ I   + L++FK Y+L SFK++ + +Q
Sbjct: 20  FISLIFNVI--TILLIVFKSYKLDSFKYYLLAYQ 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,819
Number of Sequences: 27780
Number of extensions: 401701
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)