Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_G01
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    26   6.7  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.9  

>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  MYRKYNNEAPKIFNCVSINK 77
           +Y+KY  + P +F  +SINK
Sbjct: 75  VYKKYGKQLPFLFKVLSINK 94


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 625  ITHHIISYF*CRGQFRTHSRAL 690
            + HH++S   C G F TH ++L
Sbjct: 1121 VLHHLVSNIGCLGFFSTHYQSL 1142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,990
Number of Sequences: 5004
Number of extensions: 43443
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)